[HTML][HTML] Protein–protein interaction prediction with deep learning: A comprehensive review
Most proteins perform their biological function by interacting with themselves or other
molecules. Thus, one may obtain biological insights into protein functions, disease …
molecules. Thus, one may obtain biological insights into protein functions, disease …
Knowledge graph-enhanced molecular contrastive learning with functional prompt
Deep learning models can accurately predict molecular properties and help making the
search for potential drug candidates faster and more efficient. Many existing methods are …
search for potential drug candidates faster and more efficient. Many existing methods are …
Application of message passing neural networks for molecular property prediction
Accurate molecular property prediction, as one of the classical cheminformatics topics, plays
a prominent role in the fields of computer-aided drug design. For instance, property …
a prominent role in the fields of computer-aided drug design. For instance, property …
Structure-aware interactive graph neural networks for the prediction of protein-ligand binding affinity
Drug discovery often relies on the successful prediction of protein-ligand binding affinity.
Recent advances have shown great promise in applying graph neural networks (GNNs) for …
Recent advances have shown great promise in applying graph neural networks (GNNs) for …
One transformer can understand both 2d & 3d molecular data
Unlike vision and language data which usually has a unique format, molecules can naturally
be characterized using different chemical formulations. One can view a molecule as a 2D …
be characterized using different chemical formulations. One can view a molecule as a 2D …
Geomgcl: Geometric graph contrastive learning for molecular property prediction
Recently many efforts have been devoted to applying graph neural networks (GNNs) to
molecular property prediction which is a fundamental task for computational drug and …
molecular property prediction which is a fundamental task for computational drug and …
Molecular contrastive learning with chemical element knowledge graph
Molecular representation learning contributes to multiple downstream tasks such as
molecular property prediction and drug design. To properly represent molecules, graph …
molecular property prediction and drug design. To properly represent molecules, graph …
DSTG: deconvoluting spatial transcriptomics data through graph-based artificial intelligence
Recent development of spatial transcriptomics (ST) is capable of associating spatial
information at different spots in the tissue section with RNA abundance of cells within each …
information at different spots in the tissue section with RNA abundance of cells within each …
Understanding the limitations of deep models for molecular property prediction: Insights and solutions
Abstract Molecular Property Prediction (MPP) is a crucial task in the AI-driven Drug
Discovery (AIDD) pipeline, which has recently gained considerable attention thanks to …
Discovery (AIDD) pipeline, which has recently gained considerable attention thanks to …
Molgensurvey: A systematic survey in machine learning models for molecule design
Molecule design is a fundamental problem in molecular science and has critical applications
in a variety of areas, such as drug discovery, material science, etc. However, due to the large …
in a variety of areas, such as drug discovery, material science, etc. However, due to the large …