Applications of next generation sequencing in molecular ecology of non-model organisms

R Ekblom, J Galindo - Heredity, 2011 - nature.com
As most biologists are probably aware, technological advances in molecular biology during
the last few years have opened up possibilities to rapidly generate large-scale sequencing …

[HTML][HTML] Assembly algorithms for next-generation sequencing data

JR Miller, S Koren, G Sutton - Genomics, 2010 - Elsevier
The emergence of next-generation sequencing platforms led to resurgence of research in
whole-genome shotgun assembly algorithms and software. DNA sequencing data from the …

The sooty moulds

P Chomnunti, S Hongsanan, B Aguirre-Hudson, Q Tian… - Fungal diversity, 2014 - Springer
Sooty moulds are a remarkable, but poorly understood group of fungi. They coat fruits and
leaves superficially with black mycelia, which reduces photosynthesis rates of host plants …

Scaffolding pre-assembled contigs using SSPACE

M Boetzer, CV Henkel, HJ Jansen, D Butler… - …, 2011 - academic.oup.com
De novo assembly tools play a main role in reconstructing genomes from next-generation
sequencing (NGS) data and usually yield a number of contigs. Using paired-read …

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

EG Zoetendal, J Raes, B Van Den Bogert… - The ISME …, 2012 - academic.oup.com
The human gastrointestinal tract (GI tract) harbors a complex community of microbes. The
microbiota composition varies between different locations in the GI tract, but most studies …

High‐throughput DNA sequencing–concepts and limitations

M Kircher, J Kelso - Bioessays, 2010 - Wiley Online Library
Recent advances in DNA sequencing have revolutionized the field of genomics, making it
possible for even single research groups to generate large amounts of sequence data very …

Sequence-specific error profile of Illumina sequencers

K Nakamura, T Oshima, T Morimoto… - Nucleic acids …, 2011 - academic.oup.com
We identified the sequence-specific starting positions of consecutive miscalls in the map**
of reads obtained from the Illumina Genome Analyser (GA). Detailed analysis of the miscall …

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

I Birol, A Raymond, SD Jackman, S Pleasance… - …, 2013 - academic.oup.com
White spruce (Picea glauca) is a dominant conifer of the boreal forests of North America, and
providing genomics resources for this commercially valuable tree will help improve forest …

[HTML][HTML] Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

S Boisvert, F Laviolette, J Corbeil - 2010 - liebertpub.com
An accurate genome sequence of a desired species is now a pre-requisite for genome
research. An important step in obtaining a high-quality genome sequence is to correctly …

Methods to improve the accuracy of next-generation sequencing

C Cheng, Z Fei, P **ao - Frontiers in bioengineering and …, 2023 - frontiersin.org
Next-generation sequencing (NGS) is present in all fields of life science, which has greatly
promoted the development of basic research while being gradually applied in clinical …