Applications of next generation sequencing in molecular ecology of non-model organisms
As most biologists are probably aware, technological advances in molecular biology during
the last few years have opened up possibilities to rapidly generate large-scale sequencing …
the last few years have opened up possibilities to rapidly generate large-scale sequencing …
[HTML][HTML] Assembly algorithms for next-generation sequencing data
The emergence of next-generation sequencing platforms led to resurgence of research in
whole-genome shotgun assembly algorithms and software. DNA sequencing data from the …
whole-genome shotgun assembly algorithms and software. DNA sequencing data from the …
The sooty moulds
Sooty moulds are a remarkable, but poorly understood group of fungi. They coat fruits and
leaves superficially with black mycelia, which reduces photosynthesis rates of host plants …
leaves superficially with black mycelia, which reduces photosynthesis rates of host plants …
Scaffolding pre-assembled contigs using SSPACE
De novo assembly tools play a main role in reconstructing genomes from next-generation
sequencing (NGS) data and usually yield a number of contigs. Using paired-read …
sequencing (NGS) data and usually yield a number of contigs. Using paired-read …
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
The human gastrointestinal tract (GI tract) harbors a complex community of microbes. The
microbiota composition varies between different locations in the GI tract, but most studies …
microbiota composition varies between different locations in the GI tract, but most studies …
High‐throughput DNA sequencing–concepts and limitations
Recent advances in DNA sequencing have revolutionized the field of genomics, making it
possible for even single research groups to generate large amounts of sequence data very …
possible for even single research groups to generate large amounts of sequence data very …
Sequence-specific error profile of Illumina sequencers
K Nakamura, T Oshima, T Morimoto… - Nucleic acids …, 2011 - academic.oup.com
We identified the sequence-specific starting positions of consecutive miscalls in the map**
of reads obtained from the Illumina Genome Analyser (GA). Detailed analysis of the miscall …
of reads obtained from the Illumina Genome Analyser (GA). Detailed analysis of the miscall …
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data
White spruce (Picea glauca) is a dominant conifer of the boreal forests of North America, and
providing genomics resources for this commercially valuable tree will help improve forest …
providing genomics resources for this commercially valuable tree will help improve forest …
[HTML][HTML] Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies
S Boisvert, F Laviolette, J Corbeil - 2010 - liebertpub.com
An accurate genome sequence of a desired species is now a pre-requisite for genome
research. An important step in obtaining a high-quality genome sequence is to correctly …
research. An important step in obtaining a high-quality genome sequence is to correctly …
Methods to improve the accuracy of next-generation sequencing
C Cheng, Z Fei, P **ao - Frontiers in bioengineering and …, 2023 - frontiersin.org
Next-generation sequencing (NGS) is present in all fields of life science, which has greatly
promoted the development of basic research while being gradually applied in clinical …
promoted the development of basic research while being gradually applied in clinical …