A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …

Use of ITS2 region as the universal DNA barcode for plants and animals

H Yao, J Song, C Liu, K Luo, J Han, Y Li, X Pang, H Xu… - PloS one, 2010 - journals.plos.org
Background The internal transcribed spacer 2 (ITS2) region of nuclear ribosomal DNA is
regarded as one of the candidate DNA barcodes because it possesses a number of …

5.8 S-28S rRNA interaction and HMM-based ITS2 annotation

A Keller, T Schleicher, J Schultz, T Müller, T Dandekar… - Gene, 2009 - Elsevier
The internal transcribed spacer 2 (ITS2) of the nuclear ribosomal repeat unit is one of the
most commonly applied phylogenetic markers. It is a fast evolving locus, which makes it …

A critical review on some closely related species of Tetranychus sensu stricto (Acari: Tetranychidae) in the public DNA sequences databases

RS de Mendonça, D Navia, IR Diniz, P Auger… - … and Applied Acarology, 2011 - Springer
Taxonomic misidentification of the specimens used to obtain DNA sequences is a growing
problem reported for different groups of organisms, which threatens the utility of the …

The ITS2 Database III—sequences and structures for phylogeny

C Koetschan, F Förster, A Keller… - Nucleic acids …, 2010 - academic.oup.com
The internal transcribed spacer 2 (ITS2) is a widely used phylogenetic marker. In the past, it
has mainly been used for species level classifications. Nowadays, a wider applicability …

Incomplete reproductive barriers and genomic differentiation impact the spread of resistance mutations between green‐and red‐colour morphs of a cosmopolitan mite …

WX Xue, JT Sun, J Witters, M Vandenhole… - Molecular …, 2023 - Wiley Online Library
Pesticide resistance represents a clear and trackable case of adaptive evolution with a
strong societal impact. Understanding the factors associated with the evolution and spread …

[КНИГА][B] Citrus mites: identification, bionomy and control

V Vacante - 2010 - books.google.com
This book, which is divided into two parts, focuses on mites associated with citrus. The first
part provides (i) an overview of the world's citriculture, species and varieties cultivated, and …

Endosymbiont diversity and prevalence in herbivorous spider mite populations in South-Western Europe

F Zélé, I Santos, I Olivieri, M Weill… - FEMS microbiology …, 2018 - academic.oup.com
Bacterial endosymbionts are known as important players of the evolutionary ecology of their
hosts. However, their distribution, prevalence and diversity are still largely unexplored. To …

Phylogenetic analysis of the spider mite sub-family Tetranychinae (Acari: Tetranychidae) based on the mitochondrial COI gene and the 18S and the 5′ end of the …

T Matsuda, M Morishita, N Hinomoto, T Gotoh - PLoS One, 2014 - journals.plos.org
The spider mite sub-family Tetranychinae includes many agricultural pests. The internal
transcribed spacer (ITS) region of nuclear ribosomal RNA genes and the cytochrome c …