Unlocking the potential of in silico approach in designing antibodies against SARS-CoV-2

T Subramaniam, SA Mualif, WH Chan… - Frontiers in …, 2025 - frontiersin.org
Antibodies are naturally produced safeguarding proteins that the immune system generates
to fight against invasive invaders. For centuries, they have been produced artificially and …

Learning regions of interest for Bayesian optimization with adaptive level-set estimation

F Zhang, J Song, JC Bowden, A Ladd… - International …, 2023 - proceedings.mlr.press
We study Bayesian optimization (BO) in high-dimensional and non-stationary scenarios.
Existing algorithms for such scenarios typically require extensive hyperparameter tuning …

Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies

A Avila-Herrera, JA Kimbrel, J Manuel Martí, J Thissen… - Plos one, 2024 - journals.plos.org
Viral populations in natural infections can have a high degree of sequence diversity, which
can directly impact immune escape. However, antibody potency is often tested in vitro with a …

Broad-Spectrum Heavily Mutated Monoclonal Antibody Isolated from COVID-19 Convalescent Vaccinee with Capacity to Neutralize SARS-CoV2 Variants Ranging …

A Choudhary, D Calianese, W Honnen, A Kolloli… - bioRxiv, 2023 - biorxiv.org
Graphical Abstract In brief Choudhary et al. have isolated and characterized Acovimab, a
broadly neutralizing RBM-specific human monoclonal antibody with a relatively high level of …

[PDF][PDF] Analysis and modelling of innovative therapeutic approaches. Human monoclonal antibodies

D Cardamone - 2023 - iris.unito.it
Monoclonal antibodies are promising biomolecules for the prevention and treatment of
infectious diseases. The COVID-19 pandemic poses unique challenges to the health …

Robust Multi-fidelity Bayesian Optimization with Deep Kernel and Partition

F Zhang, T Desautels, Y Chen - NeurIPS 2024 Workshop on Bayesian … - openreview.net
Multi-fidelity Bayesian optimization (MFBO) is a powerful approach that uses low-fidelity,
inexpensive sources to speed up the exploration and exploitation of a high-fidelity …