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Evolutionary changes on the way to clathrin-mediated endocytosis in animals
Endocytic pathways constitute an evolutionarily ancient system that significantly contributed
to the eukaryotic cell architecture and to the diversity of cell type–specific functions and …
to the eukaryotic cell architecture and to the diversity of cell type–specific functions and …
A large-scale computational screen identifies strong potential inhibitors for disrupting SARS-CoV-2 S-protein and human ACE2 interaction
SARS-CoV-2 has infected millions of individuals across the globe and has killed over 2.7
million people. Even though vaccines against this virus have recently been introduced, the …
million people. Even though vaccines against this virus have recently been introduced, the …
[PDF][PDF] Virtual laboratory MolDynGrid as a part of scientific infrastructure for biomolecular simulations
Virtual laboratory MolDynGrid has been established for computational researches in
structural biology and bioinformatics, especially for molecular dynamics (MD) simulations of …
structural biology and bioinformatics, especially for molecular dynamics (MD) simulations of …
Optimization of grid-less scattering compensation in X-ray imaging: Simulation study
AY Danyk, SP Radchenko… - 2017 IEEE 37th …, 2017 - ieeexplore.ieee.org
Image procession algorithms for compensation of scattered radiation influence in X-ray
imaging were proposed, studied and optimized by numerical simulations. The algorithms …
imaging were proposed, studied and optimized by numerical simulations. The algorithms …
Distributed system for sampling and analysis of electroencephalograms
O Sudakov, G Kriukova, R Natarov… - 2017 9th IEEE …, 2017 - ieeexplore.ieee.org
Distributed system for sampling and analysis of electroencephalograms is proposed and
implemented in alpha state. The system is based on the previously developed database for …
implemented in alpha state. The system is based on the previously developed database for …
Asymmetric structure and domain binding interfaces of human tyrosyl‐tRNA synthetase studied by molecular dynamics simulations
Human tyrosyl‐tRNA synthetase (HsTyrRS) is composed of two structural modules: N‐
terminal catalytic core and an EMAP II‐like C‐terminal domain. The structures of these …
terminal catalytic core and an EMAP II‐like C‐terminal domain. The structures of these …
Integrated tools for molecular dynamics simulation data analysis in the MolDynGrid virtual laboratory
Existing molecular modeling software and different techniques of molecular dynamics
trajectories analysis were evaluated in terms of subsequent integration into the MolDynGrid …
trajectories analysis were evaluated in terms of subsequent integration into the MolDynGrid …
Integrated grid environment for massive distributed computing in neuroscience
Automation methods for huge amount of computations in grid environment and their
applications in Ukrainian National Grid (UNG) are described. Proposed methods are based …
applications in Ukrainian National Grid (UNG) are described. Proposed methods are based …
Computational modeling and molecular dynamics simulations of mammalian cytoplasmic tyrosyl-tRNA synthetase and its complexes with substrates
Cytoplasmic tyrosyl-tRNA synthetase (TyrRS) is one of the key enzymes of protein
biosynthesis. TyrRSs of pathogenic organisms have gained attention as potential targets for …
biosynthesis. TyrRSs of pathogenic organisms have gained attention as potential targets for …
[PDF][PDF] Geometric filters for protein–ligand complexes based on phenomenological molecular models
OO Sudakov, OM Balinskyi, MO Platonov… - Вiopolymers and …, 2013 - biopolymers.org.ua
Molecular docking is a widely used method of computer-aided drug design capable of
accurate prediction of protein-ligand complex conformations. However, scoring functions …
accurate prediction of protein-ligand complex conformations. However, scoring functions …