Metabolic engineering: methodologies and applications

MJ Volk, VG Tran, SI Tan, S Mishra, Z Fatma… - Chemical …, 2022 - ACS Publications
Metabolic engineering aims to improve the production of economically valuable molecules
through the genetic manipulation of microbial metabolism. While the discipline is a little over …

Current status and applications of genome-scale metabolic models

C Gu, GB Kim, WJ Kim, HU Kim, SY Lee - Genome biology, 2019 - Springer
Genome-scale metabolic models (GEMs) computationally describe gene-protein-reaction
associations for entire metabolic genes in an organism, and can be simulated to predict …

Systems strategies for develo** industrial microbial strains

SY Lee, HU Kim - Nature biotechnology, 2015 - nature.com
Industrial strain development requires system-wide engineering and optimization of cellular
metabolism while considering industrially relevant fermentation and recovery processes. It …

Metabolic engineering: past and future

BM Woolston, S Edgar… - Annual review of …, 2013 - annualreviews.org
We present here a broad overview of the field of metabolic engineering, describing in the
first section the key fundamental principles that define and distinguish it, as well as the …

[HTML][HTML] The secondary metabolite bioinformatics portal: computational tools to facilitate synthetic biology of secondary metabolite production

T Weber, HU Kim - Synthetic and Systems Biotechnology, 2016 - Elsevier
Natural products are among the most important sources of lead molecules for drug
discovery. With the development of affordable whole-genome sequencing technologies and …

Genome-scale models of bacterial metabolism: reconstruction and applications

M Durot, PY Bourguignon… - FEMS microbiology …, 2008 - academic.oup.com
Genome-scale metabolic models bridge the gap between genome-derived biochemical
information and metabolic phenotypes in a principled manner, providing a solid …

Use of randomized sampling for analysis of metabolic networks

J Schellenberger, BØ Palsson - Journal of biological chemistry, 2009 - ASBMB
Genome-scale metabolic network reconstructions in microorganisms have been formulated
and studied for about 8 years. The constraint-based approach has shown great promise in …

Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli

AM Feist, DC Zielinski, JD Orth, J Schellenberger… - Metabolic …, 2010 - Elsevier
Integrated approaches utilizing in silico analyses will be necessary to successfully advance
the field of metabolic engineering. Here, we present an integrated approach through a …

Current state and applications of microbial genome-scale metabolic models

WJ Kim, HU Kim, SY Lee - Current Opinion in Systems Biology, 2017 - Elsevier
Genome-scale metabolic models (GEMs) are valuable in describing an organism's entire
metabolism using genomic information and have made huge impact on systems biology and …

Integrative genome‐scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery

HU Kim, SY Kim, H Jeong, TY Kim, JJ Kim… - Molecular systems …, 2011 - embopress.org
Although the genomes of many microbial pathogens have been studied to help identify
effective drug targets and novel drugs, such efforts have not yet reached full fruition. In this …