A review of advancements in coarse-grained molecular dynamics simulations

SY Joshi, SA Deshmukh - Molecular Simulation, 2021 - Taylor & Francis
Over the last few years, coarse-grained molecular dynamics has emerged as a way to model
large and complex systems in an efficient and inexpensive manner due to its lowered …

Coarse‐graining in polymer simulation: from the atomistic to the mesoscopic scale and back

F Müller‐Plathe - ChemPhysChem, 2002 - Wiley Online Library
Polymers can be theoretically and computationally described by models pertaining to
different length scales and corresponding time scales. These models have traditionally been …

Deriving effective mesoscale potentials from atomistic simulations

D Reith, M Pütz, F Müller‐Plathe - Journal of computational …, 2003 - Wiley Online Library
We demonstrate how an iterative method for potential inversion from distribution functions
developed for simple liquid systems can be generalized to polymer systems. It uses the …

A multiscale coarse-graining method for biomolecular systems

S Izvekov, GA Voth - The Journal of Physical Chemistry B, 2005 - ACS Publications
A new approach is presented for obtaining coarse-grained (CG) force fields from fully
atomistic molecular dynamics (MD) trajectories. The method is demonstrated by applying it …

A review of multiscale computational methods in polymeric materials

A Gooneie, S Schuschnigg, C Holzer - Polymers, 2017 - mdpi.com
Polymeric materials display distinguished characteristics which stem from the interplay of
phenomena at various length and time scales. Further development of polymer systems …

[КНИГА][B] Coarse-graining of condensed phase and biomolecular systems

GA Voth - 2008 - taylorfrancis.com
Exploring recent developments in the field, Coarse-Graining of Condensed Phase and
Biomolecular Systems examines systematic ways of constructing coarse-grained …

Multiscale coarse graining of liquid-state systems

S Izvekov, GA Voth - The Journal of chemical physics, 2005 - pubs.aip.org
A methodology is described to systematically derive coarse-grained (CG) force fields for
molecular liquids from the underlying atomistic-scale forces. The coarse graining of an …

Mori–Zwanzig formalism as a practical computational tool

C Hijón, P Español, E Vanden-Eijnden… - Faraday …, 2010 - pubs.rsc.org
An operational procedure is presented to compute explicitly the different terms in the
generalized Langevin equation (GLE) for a few relevant variables obtained within Mori …

Effect of Impurities on the Formation of End-Group Clusters in Natural Rubber: Phenylalanine Dipeptide as an Impurity Protein

M Dixit, T Taniguchi - Macromolecules, 2024 - ACS Publications
Natural rubber (NR), containing nonrubber constituents such as proteins, exhibits
exceptional characteristics including high toughness, tear resistance, and wet skid …

Challenges in multiscale modeling of polymer dynamics

Y Li, BC Abberton, M Kröger, WK Liu - Polymers, 2013 - mdpi.com
The mechanical and physical properties of polymeric materials originate from the interplay of
phenomena at different spatial and temporal scales. As such, it is necessary to adopt …