Next-generation data filtering in the genomics era

W Hemstrom, JA Grummer, G Luikart… - Nature Reviews …, 2024 - nature.com
Genomic data are ubiquitous across disciplines, from agriculture to biodiversity, ecology,
evolution and human health. However, these datasets often contain noise or errors and are …

Gut bacterial composition shows sex-specific shifts during breeding season in ex situ managed black-footed ferrets

AL DeCandia, L Adeduro, P Thacher… - Journal of …, 2024 - academic.oup.com
The gut microbiome of mammals engages in a dynamic relationship with the body and
contributes to numerous physiological processes integral to overall health. Understanding …

Exploring the role of gut-lung interactions in COPD pathogenesis: a comprehensive review on microbiota characteristics and inflammation modulation

ZX Cheng, J Zhang - Chronic Obstructive Pulmonary Diseases …, 2024 - pmc.ncbi.nlm.nih.gov
Chronic obstructive pulmonary disease (COPD) is a paramount contributor to global
morbidity and mortality. Over the past decade, the concept of the “gut-lung axis” has …

Habitat shapes the gut microbiome diversity of Malayan tigers (Panthera tigris jacksoni) as revealed through metabarcoding 16S rRNA profiling

M Gani, AR Mohd-Ridwan, FT Sitam… - World Journal of …, 2024 - Springer
The gut microbiome refers to the microorganism community living within the digestive tract.
The environment plays a crucial role in sha** the gut microbiome composition of animals …

Genetic insights into the gut-lung axis: Mendelian randomization analysis on gut microbiota, lung function, and COPD

ZX Cheng, JL Hua, ZJ Jie, XJ Li… - International Journal of …, 2024 - Taylor & Francis
Background Chronic obstructive pulmonary disease (COPD) is a respiratory disorder with a
complex etiology involving genetic and environmental factors. The dysbiosis of gut …

GADPO: Genetic Algorithm based on Dominance for Primer Optimization

FM Rodríguez-Bejarano, MA Vega-Rodríguez… - Expert Systems with …, 2024 - Elsevier
The amplification of the 16S ribosomal RNA gene through the polymerase chain reaction
(PCR) is the main approach to profile bacterial communities. This gene is a widely used …

Gut microbiota, circulating inflammatory proteins and sepsis: a bi-directional Mendelian randomization study

Z Li, L Lin, Y Kong, J Feng, X Ren, Y Wang… - Frontiers in Cellular …, 2024 - frontiersin.org
Background Gut microbiota is closely related to the occurrence and development of sepsis.
However, the causal effects between the gut microbiota and sepsis, and whether circulating …

The Bacterial and pathogenic landscape of African buffalo (Syncerus caffer) whole blood and serum from Kenya

R Nyamota, EA Middlebrook, HM Abkallo, J Akoko… - Animal Microbiome, 2025 - Springer
Abstract Background African buffalo (Syncerus caffer) is a significant reservoir host for many
zoonotic and parasitic infections in Africa. These include a range of viruses and pathogenic …

Genetic evidence on the causality between gut microbiota and various asthma phenotypes: a two-sample Mendelian randomization study

ZX Cheng, YX Wu, ZJ Jie, XJ Li… - Frontiers in Cellular and …, 2024 - frontiersin.org
Introduction Asthma is a multifarious disease that manifests in various phenotypes. Among
the various factors that contribute to the development of asthma, the gut microbiota has …

Metabolomics and microbiome provide new insights into mechanisms of the variations between the larva and adult stages of the Model Beetle Tribolium castaneum …

J Bi, L Zhang, Y He - Journal of Asia-Pacific Entomology, 2024 - Elsevier
Tribolium castaneum (Herbst) is a pest that threatens global grain and cereal production.
Previous studies have shown that insect metabolism can be influenced by the gut …