A pan-grass transcriptome reveals patterns of cellular divergence in crops
Different plant species within the grasses were parallel targets of domestication, giving rise
to crops with distinct evolutionary histories and traits. Key traits that distinguish these species …
to crops with distinct evolutionary histories and traits. Key traits that distinguish these species …
Convergent evolution of plant prickles by repeated gene co-option over deep time
An enduring question in evolutionary biology concerns the degree to which episodes of
convergent trait evolution depend on the same genetic programs, particularly over long …
convergent trait evolution depend on the same genetic programs, particularly over long …
Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution
Enhanced cognitive function in humans is hypothesized to result from cortical expansion
and increased cellular diversity. However, the mechanisms that drive these phenotypic …
and increased cellular diversity. However, the mechanisms that drive these phenotypic …
Cell types as species: Exploring a metaphor
JJ Doyle - Frontiers in Plant Science, 2022 - frontiersin.org
The concept of “cell type,” though fundamental to cell biology, is controversial. Cells have
historically been classified into types based on morphology, physiology, or location. More …
historically been classified into types based on morphology, physiology, or location. More …
Reimagining Cortical Connectivity by Deconstructing Its Molecular Logic into Building Blocks
X Chen - Cold Spring Harbor Perspectives in Biology, 2024 - cshperspectives.cshlp.org
Comprehensive maps of neuronal connectivity provide a foundation for understanding the
structure of neural circuits. In a circuit, neurons are diverse in morphology …
structure of neural circuits. In a circuit, neurons are diverse in morphology …
Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator
A striking paradox is that genes with conserved protein sequence, function and expression
pattern over deep time often exhibit extremely divergent cis-regulatory sequences. It remains …
pattern over deep time often exhibit extremely divergent cis-regulatory sequences. It remains …
Coexpression enhances cross-species integration of single-cell RNA sequencing across diverse plant species
Single-cell RNA sequencing is increasingly used to investigate cross-species differences
driven by gene expression and cell-type composition in plants. However, the frequent …
driven by gene expression and cell-type composition in plants. However, the frequent …
A neural algorithm for computing bipartite matchings
Finding optimal bipartite matchings—eg, matching medical students to hospitals for
residency, items to buyers in an auction, or papers to reviewers for peer review—is a …
residency, items to buyers in an auction, or papers to reviewers for peer review—is a …
Translation efficiency covariation across cell types is a conserved organizing principle of mammalian transcriptomes
Characterization of shared patterns of RNA expression between genes across conditions
has led to the discovery of regulatory networks and novel biological functions. However, it is …
has led to the discovery of regulatory networks and novel biological functions. However, it is …
Predictive biomarkers for embryotoxicity: a machine learning approach to mitigating multicollinearity in RNA-Seq
Multicollinearity, characterized by significant co-expression patterns among genes, often
occurs in high-throughput expression data, potentially impacting the predictive model's …
occurs in high-throughput expression data, potentially impacting the predictive model's …