The gene ontology knowledgebase in 2023

SA Aleksander, J Balhoff, S Carbon, JM Cherry… - Genetics, 2023 - academic.oup.com
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …

Trends in the approval of cancer therapies by the FDA in the twenty-first century

EC Scott, AC Baines, Y Gong, R Moore Jr… - Nature Reviews Drug …, 2023 - nature.com
The cancer treatment landscape has changed dramatically since the turn of the century,
resulting in substantial improvements in outcomes for patients. This Review summarizes …

[PDF][PDF] The gene ontology knowledgebase in 2023

D Ebert, M Feuermann, P Gaudet, NL Harris, DP Hill… - Genetics, 2023 - crick.figshare.com
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …

UniProt: the Universal Protein Knowledgebase in 2025

A Bateman, MJ Martin, S Orchard, M Magrane… - Nucleic acids …, 2024 - par.nsf.gov
The aim of the UniProt Knowledgebase (UniProtKB; https://www. uniprot. org/) is to provide
users with a comprehensive, high-quality and freely accessible set of protein sequences …

Unveiling the proteome-wide autoreactome enables enhanced evaluation of emerging CAR T cell therapies in autoimmunity

A Bodansky, JL David, A Rallistan, M Kalaycioglu… - The Journal of clinical …, 2024 - jci.org
Given the global surge in autoimmune diseases, it is critical to evaluate emerging
therapeutic interventions. Despite numerous new targeted immunomodulatory therapies …

[HTML][HTML] Functional unknomics: Systematic screening of conserved genes of unknown function

JJ Rocha, SA Jayaram, TJ Stevens, N Muschalik… - PLoS …, 2023 - journals.plos.org
The human genome encodes approximately 20,000 proteins, many still uncharacterised. It
has become clear that scientific research tends to focus on well-studied proteins, leading to …

InterPro: the protein sequence classification resource in 2025<? mode longmeta?>

M Blum, A Andreeva, LC Florentino… - Nucleic Acids …, 2025 - academic.oup.com
Abstract InterPro (https://www. ebi. ac. uk/interpro) is a freely accessible resource for the
classification of protein sequences into families. It integrates predictive models, known as …

Engineering RNA export for measurement and manipulation of living cells

F Horns, JA Martinez, C Fan, M Haque, JM Linton… - Cell, 2023 - cell.com
A system for programmable export of RNA molecules from living cells would enable both
non-destructive monitoring of cell dynamics and engineering of cells capable of delivering …

Droplet-based single-cell joint profiling of histone modifications and transcriptomes

Y **e, C Zhu, Z Wang, M Tastemel, L Chang… - Nature Structural & …, 2023 - nature.com
Abstract We previously reported Paired-Tag, a combinatorial indexing-based method that
can simultaneously map histone modifications and gene expression at single-cell resolution …

Single-cell lineage capture across genomic modalities with CellTag-multi reveals fate-specific gene regulatory changes

K **dal, MT Adil, N Yamaguchi, X Yang… - Nature …, 2024 - nature.com
Complex gene regulatory mechanisms underlie differentiation and reprogramming.
Contemporary single-cell lineage-tracing (scLT) methods use expressed, heritable DNA …