[HTML][HTML] Discovery and resupply of pharmacologically active plant-derived natural products: A review

AG Atanasov, B Waltenberger… - Biotechnology …, 2015 - Elsevier
Medicinal plants have historically proven their value as a source of molecules with
therapeutic potential, and nowadays still represent an important pool for the identification of …

Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR

A Tropsha, O Isayev, A Varnek, G Schneider… - Nature Reviews Drug …, 2024 - nature.com
Quantitative structure–activity relationship (QSAR) modelling, an approach that was
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …

Molecular contrastive learning of representations via graph neural networks

Y Wang, J Wang, Z Cao… - Nature Machine …, 2022 - nature.com
Molecular machine learning bears promise for efficient molecular property prediction and
drug discovery. However, labelled molecule data can be expensive and time consuming to …

Ultra-large library docking for discovering new chemotypes

J Lyu, S Wang, TE Balius, I Singh, A Levit, YS Moroz… - Nature, 2019 - nature.com
Despite intense interest in expanding chemical space, libraries containing hundreds-of-
millions to billions of diverse molecules have remained inaccessible. Here we investigate …

Self-referencing embedded strings (SELFIES): A 100% robust molecular string representation

M Krenn, F Häse, AK Nigam, P Friederich… - Machine Learning …, 2020 - iopscience.iop.org
The discovery of novel materials and functional molecules can help to solve some of
society's most urgent challenges, ranging from efficient energy harvesting and storage to …

Autonomous discovery in the chemical sciences part I: Progress

CW Coley, NS Eyke, KF Jensen - … Chemie International Edition, 2020 - Wiley Online Library
This two‐part Review examines how automation has contributed to different aspects of
discovery in the chemical sciences. In this first part, we describe a classification for …

Exploration of ultralarge compound collections for drug discovery

WA Warr, MC Nicklaus, CA Nicolaou… - Journal of Chemical …, 2022 - ACS Publications
Designing new medicines more cheaply and quickly is tightly linked to the quest of exploring
chemical space more widely and efficiently. Chemical space is monumentally large, but …

Chemometrics in metabonomics

J Trygg, E Holmes, T Lundstedt - Journal of proteome research, 2007 - ACS Publications
We provide an overview of how the underlying philosophy of chemometrics is integrated
throughout metabonomic studies. Four steps are demonstrated:(1) definition of the aim,(2) …

The chemical space project

JL Reymond - Accounts of chemical research, 2015 - ACS Publications
Conspectus One of the simplest questions that can be asked about molecular diversity is
how many organic molecules are possible in total? To answer this question, my research …

Visualization of very large high-dimensional data sets as minimum spanning trees

D Probst, JL Reymond - Journal of Cheminformatics, 2020 - Springer
The chemical sciences are producing an unprecedented amount of large, high-dimensional
data sets containing chemical structures and associated properties. However, there are …