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A review of kernel methods for genetic association studies
Evaluating the association of multiple genetic variants with a trait of interest by use of kernel‐
based methods has made a significant impact on how genetic association analyses are …
based methods has made a significant impact on how genetic association analyses are …
Unravelling rubber tree growth by integrating GWAS and biological network-based approaches
Hevea brasiliensis (rubber tree) is a large tree species of the Euphorbiaceae family with
inestimable economic importance. Rubber tree breeding programs currently aim to improve …
inestimable economic importance. Rubber tree breeding programs currently aim to improve …
cLD: Rare-variant linkage disequilibrium between genomic regions identifies novel genomic interactions
Linkage disequilibrium (LD) is a fundamental concept in genetics; critical for studying
genetic associations and molecular evolution. However, LD measurements are only reliable …
genetic associations and molecular evolution. However, LD measurements are only reliable …
A kernel machine method for detecting higher order interactions in multimodal datasets: Application to schizophrenia
Background Technological advances are enabling us to collect multimodal datasets at an
increasing depth and resolution while with decreasing labors. Understanding complex …
increasing depth and resolution while with decreasing labors. Understanding complex …
A gene-based information gain method for detecting gene–gene interactions in case–control studies
Currently, most methods for detecting gene–gene interactions (GGIs) in genome-wide
association studies are divided into SNP-based methods and gene-based methods …
association studies are divided into SNP-based methods and gene-based methods …
Genetic-epigenetic interactions in asthma revealed by a genome-wide gene-centric search
Objectives: There is evidence to suggest that asthma pathogenesis is affected by both
genetic and epigenetic variation independently, and there is some evidence to suggest that …
genetic and epigenetic variation independently, and there is some evidence to suggest that …
A kernel regression approach to gene‐gene interaction detection for case‐control studies
Gene‐gene interactions are increasingly being addressed as a potentially important
contributor to the variability of complex traits. Consequently, attentions have moved beyond …
contributor to the variability of complex traits. Consequently, attentions have moved beyond …
A survey of statistical methods for gene-gene interaction in case-control genome-wide association studies
M Emily - Journal de la société française de statistique, 2018 - numdam.org
Over the last few years, case-control genome-wide association studies (GWAS) have proven
to be a successful tool to identify genomic regions associated with complex diseases …
to be a successful tool to identify genomic regions associated with complex diseases …
Functional genomics in cancer immunotherapy: computational approaches for biomarker and drug discovery
Although immunotherapy has recently proven effective in some cancers, most patients with
metastatic cancer do not benefit from this therapy. A lack of understanding of the …
metastatic cancer do not benefit from this therapy. A lack of understanding of the …
Eigen-Epistasis for detecting gene-gene interactions
V Stanislas, C Dalmasso, C Ambroise - BMC bioinformatics, 2017 - Springer
Background A large amount of research has been devoted to the detection and investigation
of epistatic interactions in genome-wide association studies (GWASs). Most of the literature …
of epistatic interactions in genome-wide association studies (GWASs). Most of the literature …