Computational approaches to therapeutic antibody design: established methods and emerging trends
Antibodies are proteins that recognize the molecular surfaces of potentially noxious
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
Computational prediction of protein–protein binding affinities
Protein–protein interactions form central elements of almost all cellular processes.
Knowledge of the structure of protein–protein complexes but also of the binding affinity is of …
Knowledge of the structure of protein–protein complexes but also of the binding affinity is of …
COVID-19 spike-host cell receptor GRP78 binding site prediction
Objectives Understanding the novel coronavirus (COVID-19) mode of host cell recognition
may help to fight the disease and save lives. The spike protein of coronaviruses is the main …
may help to fight the disease and save lives. The spike protein of coronaviruses is the main …
HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy
Protein–protein and protein–DNA/RNA interactions play a fundamental role in a variety of
biological processes. Determining the complex structures of these interactions is valuable, in …
biological processes. Determining the complex structures of these interactions is valuable, in …
[HTML][HTML] The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
The prediction of the quaternary structure of biomolecular macromolecules is of paramount
importance for fundamental understanding of cellular processes and drug design. In the era …
importance for fundamental understanding of cellular processes and drug design. In the era …
In situ structural analysis of the human nuclear pore complex
Nuclear pore complexes are fundamental components of all eukaryotic cells that mediate
nucleocytoplasmic exchange. Determining their 110-megadalton structure imposes a …
nucleocytoplasmic exchange. Determining their 110-megadalton structure imposes a …
Sequence co-evolution gives 3D contacts and structures of protein complexes
Protein–protein interactions are fundamental to many biological processes. Experimental
screens have identified tens of thousands of interactions, and structural biology has …
screens have identified tens of thousands of interactions, and structural biology has …
The HADDOCK web server for data-driven biomolecular docking
Computational docking is the prediction or modeling of the three-dimensional structure of a
biomolecular complex, starting from the structures of the individual molecules in their free …
biomolecular complex, starting from the structures of the individual molecules in their free …
A deep learning framework for modeling structural features of RNA-binding protein targets
RNA-binding proteins (RBPs) play important roles in the post-transcriptional control of
RNAs. Identifying RBP binding sites and characterizing RBP binding preferences are key …
RNAs. Identifying RBP binding sites and characterizing RBP binding preferences are key …
Mechanism of activation of protein kinase JAK2 by the growth hormone receptor
Introduction Class I cytokines regulate key processes such as growth, lactation,
hematopoiesis, and immune function and contribute to oncogenesis. Although the …
hematopoiesis, and immune function and contribute to oncogenesis. Although the …