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BioRED: a rich biomedical relation extraction dataset
Automated relation extraction (RE) from biomedical literature is critical for many downstream
text mining applications in both research and real-world settings. However, most existing …
text mining applications in both research and real-world settings. However, most existing …
A review of large language models and autonomous agents in chemistry
Large language models (LLMs) have emerged as powerful tools in chemistry, significantly
impacting molecule design, property prediction, and synthesis optimization. This review …
impacting molecule design, property prediction, and synthesis optimization. This review …
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
R Oughtred, J Rust, C Chang, BJ Breitkreutz… - Protein …, 2021 - Wiley Online Library
Abstract The BioGRID (Biological General Repository for Interaction Datasets, thebiogrid.
org) is an open‐access database resource that houses manually curated protein and …
org) is an open‐access database resource that houses manually curated protein and …
Text2mol: Cross-modal molecule retrieval with natural language queries
We propose a new task, Text2Mol, to retrieve molecules using natural language descriptions
as queries. Natural language and molecules encode information in very different ways …
as queries. Natural language and molecules encode information in very different ways …
Scifive: a text-to-text transformer model for biomedical literature
In this report, we introduce SciFive, a domain-specific T5 model that has been pre-trained on
large biomedical corpora. Our model outperforms the current SOTA methods (ie BERT …
large biomedical corpora. Our model outperforms the current SOTA methods (ie BERT …
A review on utilizing machine learning technology in the fields of electronic emergency triage and patient priority systems in telemedicine: Coherent taxonomy …
Background With the remarkable increasing in the numbers of patients, the triaging and
prioritizing patients into multi-emergency level is required to accommodate all the patients …
prioritizing patients into multi-emergency level is required to accommodate all the patients …
In-boxbart: Get instructions into biomedical multi-task learning
Single-task models have proven pivotal in solving specific tasks; however, they have
limitations in real-world applications where multi-tasking is necessary and domain shifts are …
limitations in real-world applications where multi-tasking is necessary and domain shifts are …
BIAS: Transparent reporting of biomedical image analysis challenges
The number of biomedical image analysis challenges organized per year is steadily
increasing. These international competitions have the purpose of benchmarking algorithms …
increasing. These international competitions have the purpose of benchmarking algorithms …
Automated assembly of molecular mechanisms at scale from text mining and curated databases
The analysis of omic data depends on machine‐readable information about protein
interactions, modifications, and activities as found in protein interaction networks, databases …
interactions, modifications, and activities as found in protein interaction networks, databases …
NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature
Automatically identifying chemical and drug names in scientific publications advances
information access for this important class of entities in a variety of biomedical disciplines by …
information access for this important class of entities in a variety of biomedical disciplines by …