Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships

JR Seymour, SA Amin, JB Raina, R Stocker - Nature microbiology, 2017 - nature.com
By controlling nutrient cycling and biomass production at the base of the food web,
interactions between phytoplankton and bacteria represent a fundamental ecological …

Bacterial RNA biology on a genome scale

J Hör, SA Gorski, J Vogel - Molecular cell, 2018 - cell.com
Bacteria are an exceedingly diverse group of organisms whose molecular exploration is
experiencing a renaissance. While the classical view of bacterial gene expression was …

Droplet-based high-throughput single microbe RNA sequencing by smRandom-seq

Z Xu, Y Wang, K Sheng, R Rosenthal, N Liu… - Nature …, 2023 - nature.com
Bacteria colonize almost all parts of the human body and can differ significantly. However,
the population level transcriptomics measurements can only describe the average bacteria …

Microbial single-cell RNA sequencing by split-pool barcoding

A Kuchina, LM Brettner, L Paleologu, CM Roco… - Science, 2021 - science.org
INTRODUCTION Bacteria heterogeneously activate gene expression programs in response
to environmental changes, stress, and other stimuli. Such behavior may serve as a bet …

Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria

F Imdahl, E Vafadarnejad, C Homberger… - Nature …, 2020 - nature.com
Bacteria respond to changes in their environment with specific transcriptional programmes,
but even within genetically identical populations these programmes are not homogenously …

Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing

SB Blattman, W Jiang, P Oikonomou, S Tavazoie - Nature microbiology, 2020 - nature.com
Despite longstanding appreciation of gene expression heterogeneity in isogenic bacterial
populations, affordable and scalable technologies for studying single bacterial cells have …

A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the human brain

JL Del-Aguila, Z Li, U Dube… - Alzheimer's research & …, 2019 - Springer
Background Alzheimer's disease (AD) is the most common form of dementia. This
neurodegenerative disorder is associated with neuronal death and gliosis heavily impacting …

Single-cell measurement of plasmid copy number and promoter activity

B Shao, J Rammohan, DA Anderson… - Nature …, 2021 - nature.com
Accurate measurements of promoter activities are crucial for predictably building genetic
systems. Here we report a method to simultaneously count plasmid DNA, RNA transcripts …

Single cell stable isotope probing in microbiology using Raman microspectroscopy

Y Wang, WE Huang, L Cui, M Wagner - Current opinion in biotechnology, 2016 - Elsevier
Highlights•Single cell Raman spectra (SCRS) are label-free and intrinsic biochemical
profiles of single microbial cells.•A number of bands of SCRS shift if cells are labeled with …

Single cell RNA sequencing of rare immune cell populations

A Nguyen, WH Khoo, I Moran, PI Croucher… - Frontiers in …, 2018 - frontiersin.org
Single-cell RNA sequencing (scRNA-Seq) is transforming our ability to characterize cells,
particularly rare cells that are often overlooked in bulk population analytical approaches …