Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships
By controlling nutrient cycling and biomass production at the base of the food web,
interactions between phytoplankton and bacteria represent a fundamental ecological …
interactions between phytoplankton and bacteria represent a fundamental ecological …
Bacterial RNA biology on a genome scale
Bacteria are an exceedingly diverse group of organisms whose molecular exploration is
experiencing a renaissance. While the classical view of bacterial gene expression was …
experiencing a renaissance. While the classical view of bacterial gene expression was …
Droplet-based high-throughput single microbe RNA sequencing by smRandom-seq
Bacteria colonize almost all parts of the human body and can differ significantly. However,
the population level transcriptomics measurements can only describe the average bacteria …
the population level transcriptomics measurements can only describe the average bacteria …
Microbial single-cell RNA sequencing by split-pool barcoding
INTRODUCTION Bacteria heterogeneously activate gene expression programs in response
to environmental changes, stress, and other stimuli. Such behavior may serve as a bet …
to environmental changes, stress, and other stimuli. Such behavior may serve as a bet …
Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria
F Imdahl, E Vafadarnejad, C Homberger… - Nature …, 2020 - nature.com
Bacteria respond to changes in their environment with specific transcriptional programmes,
but even within genetically identical populations these programmes are not homogenously …
but even within genetically identical populations these programmes are not homogenously …
Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing
Despite longstanding appreciation of gene expression heterogeneity in isogenic bacterial
populations, affordable and scalable technologies for studying single bacterial cells have …
populations, affordable and scalable technologies for studying single bacterial cells have …
A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the human brain
Background Alzheimer's disease (AD) is the most common form of dementia. This
neurodegenerative disorder is associated with neuronal death and gliosis heavily impacting …
neurodegenerative disorder is associated with neuronal death and gliosis heavily impacting …
Single-cell measurement of plasmid copy number and promoter activity
Accurate measurements of promoter activities are crucial for predictably building genetic
systems. Here we report a method to simultaneously count plasmid DNA, RNA transcripts …
systems. Here we report a method to simultaneously count plasmid DNA, RNA transcripts …
Single cell stable isotope probing in microbiology using Raman microspectroscopy
Highlights•Single cell Raman spectra (SCRS) are label-free and intrinsic biochemical
profiles of single microbial cells.•A number of bands of SCRS shift if cells are labeled with …
profiles of single microbial cells.•A number of bands of SCRS shift if cells are labeled with …
Single cell RNA sequencing of rare immune cell populations
Single-cell RNA sequencing (scRNA-Seq) is transforming our ability to characterize cells,
particularly rare cells that are often overlooked in bulk population analytical approaches …
particularly rare cells that are often overlooked in bulk population analytical approaches …