Mass spectrometry of nucleic acid noncovalent complexes

E Largy, A Konig, A Ghosh, D Ghosh… - Chemical …, 2021 - ACS Publications
Nucleic acids have been among the first targets for antitumor drugs and antibiotics. With the
unveiling of new biological roles in regulation of gene expression, specific DNA and RNA …

Quantum chemistry calculations for metabolomics: Focus review

RM Borges, SM Colby, S Das, AS Edison… - Chemical …, 2021 - ACS Publications
A primary goal of metabolomics studies is to fully characterize the small-molecule
composition of complex biological and environmental samples. However, despite advances …

Electron and ion spectroscopy of the cyclo-alanine–alanine dipeptide

J Chiarinelli, D Barreiro-Lage, P Bolognesi… - Physical Chemistry …, 2022 - pubs.rsc.org
The VUV photoionisation and photofragmentation of cyclo-alanine–alanine (cAA) has been
studied in a joint experimental and theoretical work. The photoelectron spectrum and the …

Theoretical methods for vibrational spectroscopy and collision induced dissociation in the gas phase

MP Gaigeot, R Spezia - Gas-Phase IR Spectroscopy and Structure of …, 2015 - Springer
In this chapter we review recent advances in theoretical methods to understand and
rationalize anharmonic vibrational spectroscopy (IR-MPD and IR-PD) and collision induced …

Non-covalent interactions: complexes of guanidinium with DNA and RNA nucleobases

F Blanco, B Kelly, G Sanchez-Sanz… - The Journal of …, 2013 - ACS Publications
Considering that guanidine-based derivatives are good DNA minor groove binders, we have
theoretically studied, using the Polarizable Continuum model mimicking water solvation, the …

Structure of the Pb 2+–deprotonated dGMP complex in the gas phase: a combined MS-MS/IRMPD spectroscopy/ion mobility study

JY Salpin, L MacAleese, F Chirot… - Physical Chemistry …, 2014 - pubs.rsc.org
The structure of the Pb2+–deprotonated 2′-deoxyguanosine-5′-monophosphate (dGMP)
complex, generated in the gas phase by electrospray ionization, was examined by …

Exploring binding chemistry of alkali/alkaline earth cations in solution through modulation of intramolecular charge-transfer in an excited ambidentate organic …

AH Romero, L Gotopo, G Cabrera… - Physical Chemistry …, 2023 - pubs.rsc.org
Studying the metal–ligand monoligation of alkali/alkaline earth metals (AMs) in solution
represents a significant challenge due to the low stabilization of their complexes and the …

The unusual intermediate species in the formation of Ni (II) complexes of unsymmetrical Schiff bases by Elder's method: Structural, electrochemical and magnetic …

P Mahapatra, S Ghosh, S Giri, A Ghosh - Polyhedron, 2016 - Elsevier
During the synthesis of unsymmetrical salen type Schiff base ligand using Ni (II) template by
Elder's method, we isolated three isostructural dinuclear Ni (II)-complexes as possible …

Theoretical and experimental study of the fragmentation of protonated uracil

L Sadr-Arani, P Mignon, H Chermette, T Douki - Chemical Physics Letters, 2014 - Elsevier
Different fragmentation channels of protonated uracil (UH+) have been studied in a
combined experimental and theoretical study. Various ESI mass spectrometry fragmentation …

Anions of uracils: N1 or N3? That is the question

MG Ilyina, EM Khamitov, SP Ivanov, AG Mustafin… - Computational and …, 2016 - Elsevier
The relative stability of N1 and N3 anions of twelve 5, 6-substituted uracils in aqueous
solutions was studied in IEFPCM (SMD)–TPSSTPSS/6-311+ G (d, p) approximation. Specific …