Microbial genomic island discovery, visualization and analysis
Horizontal gene transfer (also called lateral gene transfer) is a major mechanism for
microbial genome evolution, enabling rapid adaptation and survival in specific niches …
microbial genome evolution, enabling rapid adaptation and survival in specific niches …
Pan-Genome Plasticity and Virulence Factors: A Natural Treasure Trove for Acinetobacter baumannii
T Karampatakis, K Tsergouli, P Behzadi - Antibiotics, 2024 - mdpi.com
Acinetobacter baumannii is a Gram-negative pathogen responsible for a variety of
community-and hospital-acquired infections. It is recognized as a life-threatening pathogen …
community-and hospital-acquired infections. It is recognized as a life-threatening pathogen …
Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt
Background Pseudomonas aeruginosa is an important opportunistic pathogen responsible
for many infections in hospitalized and immunocompromised patients. Previous reports …
for many infections in hospitalized and immunocompromised patients. Previous reports …
Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
Viral infections dynamically alter the composition and metabolic potential of marine
microbial communities and the evolutionary trajectories of host populations with resulting …
microbial communities and the evolutionary trajectories of host populations with resulting …
PAIDB v2. 0: exploration and analysis of pathogenicity and resistance islands
Pathogenicity is a complex multifactorial process confounded by the concerted activity of
genetic regions associated with virulence and/or resistance determinants. Pathogenicity …
genetic regions associated with virulence and/or resistance determinants. Pathogenicity …
[HTML][HTML] GIPSy: genomic island prediction software
Bacteria are highly diverse organisms that are able to adapt to a broad range of
environments and hosts due to their high genomic plasticity. Horizontal gene transfer plays a …
environments and hosts due to their high genomic plasticity. Horizontal gene transfer plays a …
Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria …
Corynebacterium diphtheriae is one of the most prominent human pathogens and the
causative agent of the communicable disease diphtheria. The genomes of 12 strains …
causative agent of the communicable disease diphtheria. The genomes of 12 strains …
Inside the pan-genome-methods and software overview
L Carlos Guimaraes, L Benevides de Jesus… - Current …, 2015 - ingentaconnect.com
The number of genomes that have been deposited in databases has increased
exponentially after the advent of Next-Generation Sequencing (NGS), which produces high …
exponentially after the advent of Next-Generation Sequencing (NGS), which produces high …
The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
Corynebacterium pseudotuberculosis is a facultative intracellular pathogen and the
causative agent of several infectious and contagious chronic diseases, including caseous …
causative agent of several infectious and contagious chronic diseases, including caseous …
Complete Genome Analysis of Three Acinetobacter baumannii Clinical Isolates in China for Insight into the Diversification of Drug Resistance Elements
Background The emergence and rapid spreading of multidrug-resistant Acinetobacter
baumannii strains has become a major health threat worldwide. To better understand the …
baumannii strains has become a major health threat worldwide. To better understand the …