Predictions of the ADMET properties of candidate drug molecules utilizing different QSAR/QSPR modelling approaches

M Tareq Hassan Khan - Current drug metabolism, 2010 - ingentaconnect.com
The integration of early ADMET (absorption, distribution, metabolism, excretion and toxicity)
profiling, or simply prediction, of'lead'molecules to speed-up the'lead'selection further for …

General theory for multiple input-output perturbations in complex molecular systems. 1. Linear QSPR electronegativity models in physical, organic, and medicinal …

H Gonzalez-Diaz, S Arrasate… - Current topics in …, 2013 - ingentaconnect.com
In general perturbation methods starts with a known exact solution of a problem and add
“small” variation terms in order to approach to a solution for a related problem without known …

iACP-GAEnsC: Evolutionary genetic algorithm based ensemble classification of anticancer peptides by utilizing hybrid feature space

S Akbar, M Hayat, M Iqbal, MA Jan - Artificial intelligence in medicine, 2017 - Elsevier
Cancer is a fatal disease, responsible for one-quarter of all deaths in developed countries.
Traditional anticancer therapies such as, chemotherapy and radiation, are highly expensive …

iLoc-Euk: a multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins

KC Chou, ZC Wu, X **ao - PloS one, 2011 - journals.plos.org
Predicting protein subcellular localization is an important and difficult problem, particularly
when query proteins may have the multiplex character, ie, simultaneously exist at, or move …

pLoc-mVirus: predict subcellular localization of multi-location virus proteins via incorporating the optimal GO information into general PseAAC

X Cheng, X **ao, KC Chou - Gene, 2017 - Elsevier
Abstract Knowledge of subcellular locations of proteins is crucially important for in-depth
understanding their functions in a cell. With the explosive growth of protein sequences …

PTML Model for Proteome Mining of B-Cell Epitopes and Theoretical–Experimental Study of Bm86 Protein Sequences from Colima, Mexico

SG Martinez-Arzate, E Tenorio-Borroto… - Journal of proteome …, 2017 - ACS Publications
In this work, we developed a general perturbation theory and machine learning method for
data mining of proteomes to discover new B-cell epitopes useful for vaccine design. The …

PTML combinatorial model of ChEMBL compounds assays for multiple types of cancer

H Bediaga, S Arrasate… - ACS Combinatorial …, 2018 - ACS Publications
Determining the target proteins of new anticancer compounds is a very important task in
Medicinal Chemistry. In this sense, chemists carry out preclinical assays with a high number …

MIND-BEST: Web Server for Drugs and Target Discovery; Design, Synthesis, and Assay of MAO-B Inhibitors and Theoretical− Experimental Study of G3PDH Protein …

H González-Díaz, F Prado-Prado… - Journal of proteome …, 2011 - ACS Publications
Many drugs with very different affinity to a large number of receptors are described. Thus, in
this work, we selected drug− target pairs (DTPs/nDTPs) of drugs with high affinity/nonaffinity …

DelPhi Web Server: A comprehensive online suite for electrostatic calculations of biological macromolecules and their complexes

S Sarkar, S Witham, J Zhang… - Communications in …, 2013 - cambridge.org
Here we report a web server, the DelPhi web server, which utilizes DelPhi program to
calculate electrostatic energies and the corresponding electrostatic potential and ionic …

Perturbation Theory/Machine Learning Model of ChEMBL Data for Dopamine Targets: Docking, Synthesis, and Assay of New l-Prolyl-l-leucyl-glycinamide …

J Ferreira da Costa, D Silva, O Caamaño… - ACS Chemical …, 2018 - ACS Publications
Predicting drug–protein interactions (DPIs) for target proteins involved in dopamine
pathways is a very important goal in medicinal chemistry. We can tackle this problem using …