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The GroEL–GroES chaperonin machine: a nano-cage for protein folding
The bacterial chaperonin GroEL and its cofactor GroES constitute the paradigmatic
molecular machine of protein folding. GroEL is a large double-ring cylinder with ATPase …
molecular machine of protein folding. GroEL is a large double-ring cylinder with ATPase …
Recent advances in understanding catalysis of protein folding by molecular chaperones
Molecular chaperones are highly conserved proteins that promote proper folding of other
proteins in vivo. Diverse chaperone systems assist de novo protein folding and trafficking …
proteins in vivo. Diverse chaperone systems assist de novo protein folding and trafficking …
Release of High-Energy Water as an Essential Driving Force for the High-Affinity Binding of Cucurbit[n]urils
F Biedermann, VD Uzunova… - Journal of the …, 2012 - ACS Publications
Molecular dynamics simulations and isothermal titration calorimetry (ITC) experiments with
neutral guests illustrate that the release of high-energy water from the cavity of cucurbit [n] …
neutral guests illustrate that the release of high-energy water from the cavity of cucurbit [n] …
Converging concepts of protein folding in vitro and in vivo
Most proteins must fold into precise three-dimensional conformations to fulfill their biological
functions. Here we review recent concepts emerging from studies of protein folding in vitro …
functions. Here we review recent concepts emerging from studies of protein folding in vitro …
Protein folding in the cytoplasm and the heat shock response
RM Vabulas, S Raychaudhuri… - Cold Spring …, 2010 - cshperspectives.cshlp.org
Proteins generally must fold into precise three-dimensional conformations to fulfill their
biological functions. In the cell, this fundamental process is aided by molecular chaperones …
biological functions. In the cell, this fundamental process is aided by molecular chaperones …
Models of macromolecular crowding effects and the need for quantitative comparisons with experiment
AH Elcock - Current opinion in structural biology, 2010 - Elsevier
In recent years significant effort has been devoted to exploring the potential effects of
macromolecular crowding on protein folding and association phenomena. Theoretical …
macromolecular crowding on protein folding and association phenomena. Theoretical …
Are current atomistic force fields accurate enough to study proteins in crowded environments?
D Petrov, B Zagrovic - PLoS Computational Biology, 2014 - journals.plos.org
The high concentration of macromolecules in the crowded cellular interior influences
different thermodynamic and kinetic properties of proteins, including their structural …
different thermodynamic and kinetic properties of proteins, including their structural …
Protein quality control acts on folding intermediates to shape the effects of mutations on organismal fitness
What are the molecular properties of proteins that fall on the radar of protein quality control
(PQC)? Here we mutate the E. coli's gene encoding dihydrofolate reductase (DHFR) and …
(PQC)? Here we mutate the E. coli's gene encoding dihydrofolate reductase (DHFR) and …
Vibrational spectroscopy and dynamics of water confined inside reverse micelles
PA Pieniazek, YS Lin, J Chowdhary… - The Journal of …, 2009 - ACS Publications
In this work, we combine atomistic molecular dynamics simulations with theoretical
vibrational spectroscopy to study the properties of water confined inside bis (2-ethylhexyl) …
vibrational spectroscopy to study the properties of water confined inside bis (2-ethylhexyl) …
Single-molecule nanopore enzymology
K Willems, V Van Meervelt… - … Transactions of the …, 2017 - royalsocietypublishing.org
Biological nanopores are a class of membrane proteins that open nanoscale water conduits
in biological membranes. When they are reconstituted in artificial membranes and a bias …
in biological membranes. When they are reconstituted in artificial membranes and a bias …