Genome-wide association studies for common diseases and complex traits
JN Hirschhorn, MJ Daly - Nature reviews genetics, 2005 - nature.com
Genetic factors strongly affect susceptibility to common diseases and also influence disease-
related quantitative traits. Identifying the relevant genes has been difficult, in part because …
related quantitative traits. Identifying the relevant genes has been difficult, in part because …
Haplotype blocks and linkage disequilibrium in the human genome
JD Wall, JK Pritchard - Nature Reviews Genetics, 2003 - nature.com
There is great interest in the patterns and extent of linkage disequilibrium (LD) in humans
and other species. Characterizing LD is of central importance for gene-map** studies and …
and other species. Characterizing LD is of central importance for gene-map** studies and …
Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
CS Carlson, MA Eberle, MJ Rieder, Q Yi… - The American Journal of …, 2004 - cell.com
Common genetic polymorphisms may explain a portion of the heritable risk for common
diseases. Within candidate genes, the number of common polymorphisms is finite, but direct …
diseases. Within candidate genes, the number of common polymorphisms is finite, but direct …
[BOOK][B] Handbook of approximation algorithms and metaheuristics
TF Gonzalez - 2007 - taylorfrancis.com
Delineating the tremendous growth in this area, the Handbook of Approximation Algorithms
and Metaheuristics covers fundamental, theoretical topics as well as advanced, practical …
and Metaheuristics covers fundamental, theoretical topics as well as advanced, practical …
Gene hunting with hidden Markov model knockoffs
Modern scientific studies often require the identification of a subset of explanatory variables.
Several statistical methods have been developed to automate this task, and the framework …
Several statistical methods have been developed to automate this task, and the framework …
Partition-ligation–expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms
The map** of SNPs in human genomes has generated a lot of interest from both the
biomedical research community and industry. In conjunction with SNP map**, researchers …
biomedical research community and industry. In conjunction with SNP map**, researchers …
The role of haplotypes in candidate gene studies
AG Clark - Genetic Epidemiology: The Official Publication of the …, 2004 - Wiley Online Library
Human geneticists working on systems for which it is possible to make a strong case for a
set of candidate genes face the problem of whether it is necessary to consider the variation …
set of candidate genes face the problem of whether it is necessary to consider the variation …
Application of association map** to understanding the genetic diversity of plant germplasm resources
IY Abdurakhmonov… - International journal of …, 2008 - Wiley Online Library
Compared to the conventional linkage map**, linkage disequilibrium (LD)‐map**,
using the nonrandom associations of loci in haplotypes, is a powerful high‐resolution …
using the nonrandom associations of loci in haplotypes, is a powerful high‐resolution …
Robust inference with knockoffs
We consider the variable selection problem, which seeks to identify important variables
influencing a response Y out of many candidate features X ₁,..., Xp. We wish to do so while …
influencing a response Y out of many candidate features X ₁,..., Xp. We wish to do so while …
Detecting disease associations due to linkage disequilibrium using haplotype tags: a class of tests and the determinants of statistical power
JM Chapman, JD Cooper, JA Todd, DG Clayton - Human heredity, 2003 - karger.com
In the 'indirect'method of detecting genetic associations between a trait and a DNA variant,
we type several markers in a gene or chromosome region of linkage disequilibrium. If there …
we type several markers in a gene or chromosome region of linkage disequilibrium. If there …