[HTML][HTML] The ONIOM method and its applications
The fields of theoretical and computational chemistry have come a long way since their
inception in the mid-20th century. Fifty years ago, only rudimentary approximations for very …
inception in the mid-20th century. Fifty years ago, only rudimentary approximations for very …
QM/MM methods for biological systems
HM Senn, W Thiel - Atomistic approaches in modern biology: from …, 2007 - Springer
Thirty years after the seminal contribution by Warshel and Levitt, we review the state of the
art of combined quantum-mechanics/molecular-mechanics (QM/MM) methods, with a focus …
art of combined quantum-mechanics/molecular-mechanics (QM/MM) methods, with a focus …
Aqueous solvation free energies of ions and ion− water clusters based on an accurate value for the absolute aqueous solvation free energy of the proton
Thermochemical cycles that involve p K a, gas-phase acidities, aqueous solvation free
energies of neutral species, and gas-phase clustering free energies have been used with …
energies of neutral species, and gas-phase clustering free energies have been used with …
Microsolvated transition state models for improved insight into chemical properties and reaction mechanisms
Over the years, several methods have been developed to effectively represent the chemical
behavior of solutes in solvents. The environmental effects arising due to solvation can …
behavior of solutes in solvents. The environmental effects arising due to solvation can …
Recent progress in homogeneous multielectron transfer photocatalysis and artificial photosynthetic solar energy conversion
G Knör - Coordination Chemistry Reviews, 2015 - Elsevier
As a consequence of global population growth, our modern civilization is facing many
upcoming challenges such as gradually depleting energy resources, anthropogenic climate …
upcoming challenges such as gradually depleting energy resources, anthropogenic climate …
Theoretical studies of the active-site structure, spectroscopic and thermodynamic properties, and reaction mechanism of multicopper oxidases
In this article, we review recent theoretical work that has complemented the extensive
experimental data available for the multicopper oxidases (MCO) and led to the elucidation of …
experimental data available for the multicopper oxidases (MCO) and led to the elucidation of …
Murburn precepts for the light reaction of oxygenic photosynthesis
Robert Emerson's original observation (1957) that “oxygenesis occurs even with far-red light
excitation of Photosystem I” is incompatible with the extant Kok-Joliot cycle's foundation that …
excitation of Photosystem I” is incompatible with the extant Kok-Joliot cycle's foundation that …
Prediction of reduction potentials of copper proteins with continuum electrostatics and density functional theory
Blue copper proteins, such as azurin, show dramatic changes in Cu2+/Cu+ reduction
potential upon mutation over the full physiological range. Hence, they have important …
potential upon mutation over the full physiological range. Hence, they have important …
Reduction Potentials and Acidity Constants of Mn Superoxide Dismutase Calculated by QM/MM Free‐Energy Methods
J Heimdal, M Kaukonen, M Srnec, L Rulíšek… - …, 2011 - Wiley Online Library
We used two theoretical methods to estimate reduction potentials and acidity constants in
Mn superoxide dismutase (MnSOD), namely combined quantum mechanical and molecular …
Mn superoxide dismutase (MnSOD), namely combined quantum mechanical and molecular …
Atomic Resolution Crystal Structures, EXAFS, and Quantum Chemical Studies of Rusticyanin and Its Two Mutants Provide Insight into Its Unusual Properties,
ML Barrett, I Harvey, M Sundararajan, R Surendran… - Biochemistry, 2006 - ACS Publications
Rusticyanin from the extremophile Thiobacillus ferrooxidans is a blue copper protein with
unusually high redox potential and acid stability. We present the crystal structures of native …
unusually high redox potential and acid stability. We present the crystal structures of native …