The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
J Shaw, EB Lickey, JT Beck, SB Farmer… - American journal of …, 2005 - Wiley Online Library
Chloroplast DNA sequences are a primary source of data for plant molecular systematic
studies. A few key papers have provided the molecular systematics community with …
studies. A few key papers have provided the molecular systematics community with …
Origin and early evolution of angiosperms
Contributions from paleobotany, phylogenetics, genomics, developmental biology, and
developmental genetics have yielded tremendous insight into Darwin's “abominable …
developmental genetics have yielded tremendous insight into Darwin's “abominable …
Power and limitations of the chloroplast trn L (UAA) intron for plant DNA barcoding
DNA barcoding should provide rapid, accurate and automatable species identifications by
using a standardized DNA region as a tag. Based on sequences available in GenBank and …
using a standardized DNA region as a tag. Based on sequences available in GenBank and …
Widespread genome duplications throughout the history of flowering plants
Genomic comparisons provide evidence for ancient genome-wide duplications in a diverse
array of animals and plants. We developed a birth–death model to identify evidence for …
array of animals and plants. We developed a birth–death model to identify evidence for …
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
Although great progress has been made in clarifying deep-level angiosperm relationships,
several early nodes in the angiosperm branch of the Tree of Life have proved difficult to …
several early nodes in the angiosperm branch of the Tree of Life have proved difficult to …
[BOOK][B] Phylogeny and Evolution of the Angiosperms
Although they are relative latecomers on the evolutionary scene, having emerged only 135?
170 million years ago, angiosperms—or flowering plants—are the most diverse and species …
170 million years ago, angiosperms—or flowering plants—are the most diverse and species …
Angiosperm phylogeny based on <011>matK sequence information
Plastid matK gene sequences for 374 genera representing all angiosperm orders and 12
genera of gymnosperms were analyzed using parsimony (MP) and Bayesian inference (BI) …
genera of gymnosperms were analyzed using parsimony (MP) and Bayesian inference (BI) …
Phylogeny of Amaranthaceae and Chenopodiaceae and the Evolution of C4 Photosynthesis
A phylogenetic analysis of Chenopodiaceae and Amaranthaceae was carried out using
sequence variation of the chloroplast gene rbc L. Our sampling included 108 species of …
sequence variation of the chloroplast gene rbc L. Our sampling included 108 species of …
Non-coding nuclear DNA markers in phylogenetic reconstruction
M Calonje, S Martín-Bravo, C Dobeš, W Gong… - Plant Systematics and …, 2009 - Springer
Molecular DNA based data sets are the most important resource for phylogenetic
reconstruction. Among the various marker systems, which were introduced and optimized …
reconstruction. Among the various marker systems, which were introduced and optimized …
Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: the tortoise and the hare IV
J Shaw, HL Shafer, OR Leonard… - American Journal of …, 2014 - Wiley Online Library
• Premise of the study: Noncoding chloroplast DNA (NC‐cpDNA) sequences are the staple
data source of low‐level phylogeographic and phylogenetic studies of angiosperms. We …
data source of low‐level phylogeographic and phylogenetic studies of angiosperms. We …