Understanding bacteriophage specificity in natural microbial communities

B Koskella, S Meaden - Viruses, 2013 - mdpi.com
Studying the coevolutionary dynamics between bacteria and the bacteriophage viruses that
infect them is critical to understanding both microbial diversity and ecosystem functioning …

The endosymbiotic origin, diversification and fate of plastids

PJ Keeling - … Transactions of the Royal Society B …, 2010 - royalsocietypublishing.org
Plastids and mitochondria each arose from a single endosymbiotic event and share many
similarities in how they were reduced and integrated with their host. However, the …

Primer, pipelines, parameters: issues in 16S rRNA gene sequencing

I Abellan-Schneyder, MS Matchado, S Reitmeier… - Msphere, 2021 - Am Soc Microbiol
Short-amplicon 16S rRNA gene sequencing is currently the method of choice for studies
investigating microbiomes. However, comparative studies on differences in procedures are …

Treatment of peanut allergy and colitis in mice via the intestinal release of butyrate from polymeric micelles

R Wang, S Cao, MEH Bashir, LA Hesser, Y Su… - Nature Biomedical …, 2023 - nature.com
The microbiome modulates host immunity and aids the maintenance of tolerance in the gut,
where microbial and food-derived antigens are abundant. Yet modern dietary factors and …

Bifidobacterium infantis treatment promotes weight gain in Bangladeshi infants with severe acute malnutrition

MJ Barratt, S Nuzhat, K Ahsan, SA Frese… - Science Translational …, 2022 - science.org
Disrupted development of the gut microbiota is a contributing cause of childhood
malnutrition. Bifidobacterium longum subspecies infantis is a prominent early colonizer of …

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children

JL Gehrig, S Venkatesh, HW Chang, MC Hibberd… - Science, 2019 - science.org
INTRODUCTION There is a dimension to postnatal human development that involves
assembly of microbial communities in different body habitats, including the gut. Children with …

Exposure of soil collembolans to microplastics perturbs their gut microbiota and alters their isotopic composition

D Zhu, QL Chen, XL An, XR Yang, P Christie… - Soil Biology and …, 2018 - Elsevier
Abstract Effects of microplastics on aquatic organisms have been widely studied in recent
years but effects on soil biota, and especially on the gut microbiota of soil animals, remain …

Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments

SH Mazhar, X Li, A Rashid, JM Su, J Xu… - Science of The Total …, 2021 - Elsevier
Environmental selection of antibiotic resistance genes (ARGs) is considered to be caused by
antibiotic or metal residues, frequently used in livestock. In this study we examined three …

Temporal dynamics of antibiotic resistome in the plastisphere during microbial colonization

K Yang, QL Chen, ML Chen, HZ Li, H Liao… - Environmental …, 2020 - ACS Publications
The increasing and simultaneous pollution of plastic debris and antibiotic resistance in
aquatic environments makes plastisphere a great health concern. However, the …

Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis

B Yang, Y Wang, PY Qian - BMC bioinformatics, 2016 - Springer
Abstract Background Prokaryotic 16S ribosomal RNA (rRNA) sequences are widely used in
environmental microbiology and molecular evolution as reliable markers for the taxonomic …