Status and prospects of genome‐wide association studies in plants

L Tibbs Cortes, Z Zhang, J Yu - The plant genome, 2021 - Wiley Online Library
Genome‐wide association studies (GWAS) have developed into a powerful and ubiquitous
tool for the investigation of complex traits. In large part, this was fueled by advances in …

Learning from co-expression networks: possibilities and challenges

EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …

Rice SNP-seek database update: new SNPs, indels, and queries

L Mansueto, RR Fuentes, FN Borja… - Nucleic acids …, 2017 - academic.oup.com
We describe updates to the Rice SNP-Seek Database since its first release. We ran a new
SNP-calling pipeline followed by filtering that resulted in complete, base, filtered and core …

Leaf morphology, rather than plant water status, underlies genetic variation of rice leaf rolling under drought

AJ Cal, M Sanciangco, MC Rebolledo… - Plant, cell & …, 2019 - Wiley Online Library
Soil drying causes leaf rolling in rice, but the relationship between leaf rolling and drought
tolerance has historically confounded selection of drought‐tolerant genotypes. In this study …

Target of rapamycin signaling orchestrates growth–defense trade‐offs in plants

D De Vleesschauwer, O Filipe, G Hoffman… - New …, 2018 - Wiley Online Library
Plant defense to microbial pathogens is often accompanied by significant growth inhibition.
How plants merge immune system function with normal growth and development is still …

The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice

J Hu, L Huang, G Chen, H Liu, Y Zhang, R Zhang… - Rice, 2021 - Springer
Grain weight and grain number, the two important yield traits, are mainly determined by
grain size and panicle architecture in rice. Herein, we report the identification and functional …

Photosynthesis in rice is increased by CRISPR/Cas9-mediated transformation of two truncated light-harvesting antenna

D Caddell, NJ Langenfeld, MJH Eckels… - Frontiers in Plant …, 2023 - frontiersin.org
Plants compete for light partly by over-producing chlorophyll in leaves. The resulting high
light absorption is an effective strategy for out competing neighbors in mixed communities …

Variation in seed longevity among diverse Indica rice varieties

JS Lee, M Velasco-Punzalan, M Pacleb… - Annals of …, 2019 - academic.oup.com
Abstract Background and Aims Understanding variation in seed longevity, especially within
closely related germplasm, will lead to better understanding of the molecular basis of this …

Toward integrated multi-omics intervention: rice trait improvement and stress management

Z Iqbal, MS Iqbal, MIR Khan, MI Ansari - Frontiers in Plant Science, 2021 - frontiersin.org
Rice (Oryza sativa) is an imperative staple crop for nearly half of the world's population.
Challenging environmental conditions encompassing abiotic and biotic stresses negatively …