Multimodal deep learning for biomedical data fusion: a review

SR Stahlschmidt, B Ulfenborg… - Briefings in …, 2022 - academic.oup.com
Biomedical data are becoming increasingly multimodal and thereby capture the underlying
complex relationships among biological processes. Deep learning (DL)-based data fusion …

A roadmap for multi-omics data integration using deep learning

M Kang, E Ko, TB Mersha - Briefings in Bioinformatics, 2022 - academic.oup.com
High-throughput next-generation sequencing now makes it possible to generate a vast
amount of multi-omics data for various applications. These data have revolutionized …

Deep learning based multimodal biomedical data fusion: An overview and comparative review

J Duan, J **ong, Y Li, W Ding - Information Fusion, 2024 - Elsevier
Multimodal biomedical data fusion plays a pivotal role in distilling comprehensible and
actionable insights by seamlessly integrating disparate biomedical data from multiple …

A benchmark study of deep learning-based multi-omics data fusion methods for cancer

D Leng, L Zheng, Y Wen, Y Zhang, L Wu, J Wang… - Genome biology, 2022 - Springer
Background A fused method using a combination of multi-omics data enables a
comprehensive study of complex biological processes and highlights the interrelationship of …

A compendium and comparative epigenomics analysis of cis-regulatory elements in the pig genome

Y Zhao, Y Hou, Y Xu, Y Luan, H Zhou, X Qi… - Nature …, 2021 - nature.com
Although major advances in genomics have initiated an exciting new era of research, a lack
of information regarding cis-regulatory elements has limited the genetic improvement or …

The potential new microbial hazard monitoring tool in food safety: integration of metabolomics and artificial intelligence

Y Feng, A Soni, G Brightwell, MM Reis, Z Wang… - Trends in Food Science …, 2024 - Elsevier
Background For a sustainable food processing environment, robust and real-time monitoring
of pathogens is particularly important. Therefore, novel methods integrating metabolomics …

Artificial intelligence accelerates multi-modal biomedical process: A Survey

J Li, X Han, Y Qin, F Tan, Y Chen, Z Wang, H Song… - Neurocomputing, 2023 - Elsevier
The abundance of artificial intelligence AI algorithms and growing computing power has
brought a disruptive revolution to the smart medical industry. Its powerful data abstraction …

AGIDB: a versatile database for genotype imputation and variant decoding across species

K Zhang, J Liang, Y Fu, J Chu, L Fu… - Nucleic Acids …, 2024 - academic.oup.com
The high cost of large-scale, high-coverage whole-genome sequencing has limited its
application in genomics and genetics research. The common approach has been to impute …

Pathformer: a biological pathway informed transformer for disease diagnosis and prognosis using multi-omics data

X Liu, Y Tao, Z Cai, P Bao, H Ma, K Li, M Li… - …, 2024 - academic.oup.com
Motivation Multi-omics data provide a comprehensive view of gene regulation at multiple
levels, which is helpful in achieving accurate diagnosis of complex diseases like cancer …

IAnimal: a cross-species omics knowledgebase for animals

Y Fu, H Liu, J Dou, Y Wang, Y Liao… - Nucleic acids …, 2023 - academic.oup.com
With the exponential growth of multi-omics data, its integration and utilization have brought
unprecedented opportunities for the interpretation of gene regulation mechanisms and the …