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Metagenomics: An effective approach for exploring microbial diversity and functions
Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …
The skin microbiome: current techniques, challenges, and future directions
Skin acts as a barrier that promotes the colonization of bacteria, fungi, archaea, and viruses
whose membership and function may differ depending on the various specialized niches or …
whose membership and function may differ depending on the various specialized niches or …
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …
challenging and hampers insights into the structure and function of microbial communities …
Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples
Host–microbe interactions have been linked to health and disease states through the use of
microbial taxonomic profiling, mostly via 16S ribosomal RNA gene sequencing. However …
microbial taxonomic profiling, mostly via 16S ribosomal RNA gene sequencing. However …
[HTML][HTML] The application of metagenomics to study microbial communities and develop desirable traits in fermented foods
The microbial communities present within fermented foods are diverse and dynamic,
producing a variety of metabolites responsible for the fermentation processes, imparting …
producing a variety of metabolites responsible for the fermentation processes, imparting …
Effect of diet on the gut mycobiome and potential implications in inflammatory bowel disease
The gut microbiome is a complex, unique entity implicated in the prevention, pathogenesis,
and progression of common gastrointestinal diseases. While largely dominated by bacterial …
and progression of common gastrointestinal diseases. While largely dominated by bacterial …
Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies
Large-scale studies are essential to answer questions about complex microbial communities
that can be extremely dynamic across hosts, environments, and time points. However …
that can be extremely dynamic across hosts, environments, and time points. However …
Target-enriched long-read sequencing (TELSeq) contextualizes antimicrobial resistance genes in metagenomes
Background Metagenomic data can be used to profile high-importance genes within
microbiomes. However, current metagenomic workflows produce data that suffer from low …
microbiomes. However, current metagenomic workflows produce data that suffer from low …
[HTML][HTML] Comparison of adsorption-extraction (AE) workflows for improved measurements of viral and bacterial nucleic acid in untreated wastewater
The lack of standardized methods and large differences in virus concentration and extraction
workflows have hampered Severe Acute Respiratory Syndrome (SARS-CoV-2) wastewater …
workflows have hampered Severe Acute Respiratory Syndrome (SARS-CoV-2) wastewater …
Identifying eukaryotes and factors influencing their biogeography in drinking water metagenomes
The biogeography of eukaryotes in drinking water systems is poorly understood relative to
that of prokaryotes or viruses, limiting the understanding of their role and management. A …
that of prokaryotes or viruses, limiting the understanding of their role and management. A …