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Orthologs, paralogs, and evolutionary genomics
EV Koonin - Annu. Rev. Genet., 2005 - annualreviews.org
Orthologs and paralogs are two fundamentally different types of homologous genes that
evolved, respectively, by vertical descent from a single ancestral gene and by duplication …
evolved, respectively, by vertical descent from a single ancestral gene and by duplication …
Netting the stress responses in fish
JC Balasch, L Tort - Frontiers in Endocrinology, 2019 - frontiersin.org
In the last decade, the concept of animal stress has been stressed thin to accommodate the
effects of short-term changes in cell and tissue physiology, major behavioral syndromes in …
effects of short-term changes in cell and tissue physiology, major behavioral syndromes in …
[HTML][HTML] Pan-genome of wild and cultivated soybeans
Y Liu, H Du, P Li, Y Shen, H Peng, S Liu, GA Zhou… - Cell, 2020 - cell.com
Soybean is one of the most important vegetable oil and protein feed crops. To capture the
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …
Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals
Olfactory receptors (ORs) detect odors in the environment, and OR genes constitute the
largest multigene family in mammals. Numbers of OR genes vary greatly among species …
largest multigene family in mammals. Numbers of OR genes vary greatly among species …
An integrated view of protein evolution
Why do proteins evolve at different rates? Advances in systems biology and genomics have
facilitated a move from studying individual proteins to characterizing global cellular factors …
facilitated a move from studying individual proteins to characterizing global cellular factors …
Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryzaand their phylogenetic utility across various taxonomic levels
Background Although the overwhelming majority of genes found in angiosperms are
members of gene families, and both gene-and genome-duplication are pervasive forces in …
members of gene families, and both gene-and genome-duplication are pervasive forces in …
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
Teleost fishes provide the first unambiguous support for ancient whole-genome duplication
in an animal lineage. Studies in yeast or plants have shown that the effects of such …
in an animal lineage. Studies in yeast or plants have shown that the effects of such …
Gene duplication: a drive for phenotypic diversity and cause of human disease
B Conrad, SE Antonarakis - Annu. Rev. Genomics Hum. Genet., 2007 - annualreviews.org
Gene duplication is one of the key factors driving genetic innovation, ie, producing novel
genetic variants. Although the contribution of whole-genome and segmental duplications to …
genetic variants. Although the contribution of whole-genome and segmental duplications to …
A catalog of neutral and deleterious polymorphism in yeast
SW Doniger, HS Kim, D Swain, D Corcuera… - PLoS …, 2008 - journals.plos.org
The abundance and identity of functional variation segregating in natural populations is
paramount to dissecting the molecular basis of quantitative traits as well as human genetic …
paramount to dissecting the molecular basis of quantitative traits as well as human genetic …
Paleopolyploidy and gene duplication in soybean and other legumes
Two of the most important observations from whole-genome sequences have been the high
rate of gene birth and death and the prevalence of large-scale duplication events, including …
rate of gene birth and death and the prevalence of large-scale duplication events, including …