The planktonic protist interactome: where do we stand after a century of research?
Microbial interactions are crucial for Earth ecosystem function, but our knowledge about
them is limited and has so far mainly existed as scattered records. Here, we have surveyed …
them is limited and has so far mainly existed as scattered records. Here, we have surveyed …
[HTML][HTML] Using R and bioconductor in clinical genomics and transcriptomics
JL Sepulveda - The Journal of Molecular Diagnostics, 2020 - Elsevier
Bioinformatics pipelines are essential in the analysis of genomic and transcriptomic data
generated by next-generation sequencing (NGS). Recent guidelines emphasize the need …
generated by next-generation sequencing (NGS). Recent guidelines emphasize the need …
Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation
Eukaryotic transcriptomes contain a major non–protein-coding component that includes
precursors of small RNAs as well as long noncoding RNA (lncRNAs). Here, we utilized the …
precursors of small RNAs as well as long noncoding RNA (lncRNAs). Here, we utilized the …
A stress recovery signaling network for enhanced flooding tolerance in Arabidopsis thaliana
Abiotic stresses in plants are often transient, and the recovery phase following stress
removal is critical. Flooding, a major abiotic stress that negatively impacts plant biodiversity …
removal is critical. Flooding, a major abiotic stress that negatively impacts plant biodiversity …
Endothelial Notch1 signaling in white adipose tissue promotes cancer cachexia
J Taylor, L Uhl, I Moll, SS Hasan, L Wiedmann… - Nature Cancer, 2023 - nature.com
Cachexia is a major cause of morbidity and mortality in individuals with cancer and is
characterized by weight loss due to adipose and muscle tissue wasting. Hallmarks of white …
characterized by weight loss due to adipose and muscle tissue wasting. Hallmarks of white …
Acute SARS-CoV-2 infection is associated with an increased abundance of bacterial pathogens, including Pseudomonas aeruginosa in the nose
Research conducted on severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
pathogenesis and coronavirus disease 2019 (COVID-19) generally focuses on the systemic …
pathogenesis and coronavirus disease 2019 (COVID-19) generally focuses on the systemic …
Single dose of a VSV-based vaccine rapidly protects macaques from Marburg virus disease
Marburg virus (MARV) is a member of the filovirus family that causes hemorrhagic disease
with high case fatality rates. MARV is on the priority list of the World Health Organization for …
with high case fatality rates. MARV is on the priority list of the World Health Organization for …
RoboFlow: a data-centric workflow management system for develo** AI-enhanced Robots
We propose RoboFlow, a cloud-based workflow management system orchestrating the
pipelines of develo** AI-enhanced robots. Unlike most traditional robotic development …
pipelines of develo** AI-enhanced robots. Unlike most traditional robotic development …
Chromosome 8p engineering reveals increased metastatic potential targetable by patient-specific synthetic lethality in liver cancer
T Huth, EC Dreher, S Lemke, S Fritzsche… - Science …, 2023 - science.org
Large-scale chromosomal aberrations are prevalent in human cancer, but their function
remains poorly understood. We established chromosome-engineered hepatocellular …
remains poorly understood. We established chromosome-engineered hepatocellular …
RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution
Ribosome profiling (Ribo-seq) is a powerful technology for globally monitoring RNA
translation; ranging from codon occupancy profiling, identification of actively translated open …
translation; ranging from codon occupancy profiling, identification of actively translated open …