What is the “modified” CTAB protocol? Characterizing modifications to the CTAB DNA extraction protocol

JJ Schenk, LE Becklund, SJ Carey… - Applications in Plant …, 2023 - Wiley Online Library
Cetyltrimethylammonium bromide (CTAB)–based methods are widely used to isolate DNA
from plant tissues, but the unique chemical composition of secondary metabolites among …

The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine

K Yoshida, VJ Schuenemann, LM Cano, M Pais… - elife, 2013 - elifesciences.org
Phytophthora infestans, the cause of potato late blight, is infamous for having triggered the
Irish Great Famine in the 1840s. Until the late 1970s, P. infestans diversity outside of its …

Novel substrates as sources of ancient DNA: prospects and hurdles

EJ Green, CF Speller - Genes, 2017 - mdpi.com
Following the discovery in the late 1980s that hard tissues such as bones and teeth preserve
genetic information, the field of ancient DNA analysis has typically concentrated upon these …

The global speciation continuum of the cyanobacterium Microcoleus

A Stanojković, S Skoupý, H Johannesson… - Nature …, 2024 - nature.com
Speciation is a continuous process driven by genetic, geographic, and ecological barriers to
gene flow. It is widely investigated in multicellular eukaryotes, yet we are only beginning to …

Transposon activation is a major driver in the genome evolution of cultivated olive trees (Olea europaea L.)

J Jiménez‐Ruiz, JA Ramírez‐Tejero… - The Plant …, 2020 - Wiley Online Library
The primary domestication of olive (Olea europaea L.) in the Levant dates back to the
Neolithic period, around 6,000–5,500 BC, as some archeological remains attest. Cultivated …

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

M Mascher, VJ Schuenemann, U Davidovich… - Nature Genetics, 2016 - nature.com
The cereal grass barley was domesticated about 10,000 years before the present in the
Fertile Crescent and became a founder crop of Neolithic agriculture. Here we report the …

Gourds and squashes (Cucurbita spp.) adapted to megafaunal extinction and ecological anachronism through domestication

L Kistler, LA Newsom, TM Ryan, AC Clarke… - Proceedings of the …, 2015 - pnas.org
The genus Cucurbita (squashes, pumpkins, gourds) contains numerous domesticated
lineages with ancient New World origins. It was broadly distributed in the past but has …

Transoceanic drift and the domestication of African bottle gourds in the Americas

L Kistler, Á Montenegro, BD Smith, JA Gifford… - Proceedings of the …, 2014 - pnas.org
Bottle gourd (Lagenaria siceraria) was one of the first domesticated plants, and the only one
with a global distribution during pre-Columbian times. Although native to Africa, bottle gourd …

Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens

CL Weiß, VJ Schuenemann… - Royal Society …, 2016 - royalsocietypublishing.org
Herbaria archive a record of changes of worldwide plant biodiversity harbouring millions of
specimens that contain DNA suitable for genome sequencing. To profit from this resource, it …

Ancient DNA extraction methods for herbarium specimens: When is it worth the effort?

P Marinček, ND Wagner… - Applications in Plant …, 2022 - Wiley Online Library
Premise Herbaria harbor a tremendous number of plant specimens that are rarely used for
molecular systematic studies, largely due to the difficulty in extracting sufficient amounts of …