Dynamic alternative DNA structures in biology and disease

G Wang, KM Vasquez - Nature Reviews Genetics, 2023 - nature.com
Repetitive elements in the human genome, once considered 'junk DNA', are now known to
adopt more than a dozen alternative (that is, non-B) DNA structures, such as self-annealed …

Causes of molecular convergence and parallelism in protein evolution

JF Storz - Nature Reviews Genetics, 2016 - nature.com
To what extent is the convergent evolution of protein function attributable to convergent or
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …

Predictable convergence in hemoglobin function has unpredictable molecular underpinnings

C Natarajan, FG Hoffmann, RE Weber, A Fago, CC Witt… - Science, 2016 - science.org
To investigate the predictability of genetic adaptation, we examined the molecular basis of
convergence in hemoglobin function in comparisons involving 56 avian taxa that have …

Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics

RG Parra, NP Schafer, LG Radusky… - Nucleic acids …, 2016 - academic.oup.com
The protein frustratometer is an energy landscape theory-inspired algorithm that aims at
localizing and quantifying the energetic frustration present in protein molecules. Frustration …

DNA fragility in the parallel evolution of pelvic reduction in stickleback fish

KT **e, G Wang, AC Thompson, JI Wucherpfennig… - Science, 2019 - science.org
Evolution generates a remarkable breadth of living forms, but many traits evolve repeatedly,
by mechanisms that are still poorly understood. A classic example of repeated evolution is …

High-altitude adaptation: mechanistic insights from integrated genomics and physiology

JF Storz - Molecular biology and evolution, 2021 - academic.oup.com
Population genomic analyses of high-altitude humans and other vertebrates have identified
numerous candidate genes for hypoxia adaptation, and the physiological pathways …

Life ascending: mechanism and process in physiological adaptation to high-altitude hypoxia

JF Storz, GR Scott - Annual Review of Ecology, Evolution, and …, 2019 - annualreviews.org
To cope with the reduced availability of O2 at high altitude, air-breathing vertebrates have
evolved myriad adjustments in the cardiorespiratory system to match tissue O2 delivery with …

Hemoglobin–oxygen affinity in high-altitude vertebrates: is there evidence for an adaptive trend?

JF Storz - Journal of Experimental Biology, 2016 - journals.biologists.com
In air-breathing vertebrates at high altitude, fine-tuned adjustments in hemoglobin (Hb)–O2
affinity provide an energetically efficient means of mitigating the effects of arterial …

Mutation bias and the predictability of evolution

AV Cano, BL Gitschlag… - … of the Royal …, 2023 - royalsocietypublishing.org
Predicting evolutionary outcomes is an important research goal in a diversity of contexts.
The focus of evolutionary forecasting is usually on adaptive processes, and efforts to …

[LIBRO][B] Hemoglobin: insights into protein structure, function, and evolution

JF Storz - 2018 - books.google.com
The primary aim of this book is to provide a synthesis of our current understanding of
hemoglobin function and evolution, and to illustrate how research on one particular family of …