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Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison
The biomedical literature is growing rapidly, and the extraction of meaningful information
from the large amount of literature is increasingly important. Biomedical named entity …
from the large amount of literature is increasingly important. Biomedical named entity …
Information retrieval and text mining technologies for chemistry
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …
reports, or the web is a pressing need shared by researchers and patent attorneys from …
Quantifying the advantage of domain-specific pre-training on named entity recognition tasks in materials science
A bottleneck in efficiently connecting new materials discoveries to established literature has
arisen due to an increase in publications. This problem may be addressed by using named …
arisen due to an increase in publications. This problem may be addressed by using named …
TaggerOne: joint named entity recognition and normalization with semi-Markov Models
Motivation: Text mining is increasingly used to manage the accelerating pace of the
biomedical literature. Many text mining applications depend on accurate named entity …
biomedical literature. Many text mining applications depend on accurate named entity …
[HTML][HTML] Opportunities and challenges of text mining in materials research
Research publications are the major repository of scientific knowledge. However, their
unstructured and highly heterogenous format creates a significant obstacle to large-scale …
unstructured and highly heterogenous format creates a significant obstacle to large-scale …
The CHEMDNER corpus of chemicals and drugs and its annotation principles
The automatic extraction of chemical information from text requires the recognition of
chemical entity mentions as one of its key steps. When develo** supervised named entity …
chemical entity mentions as one of its key steps. When develo** supervised named entity …
[HTML][HTML] Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports
A significant amount of information about drug-related safety issues such as adverse effects
are published in medical case reports that can only be explored by human readers due to …
are published in medical case reports that can only be explored by human readers due to …
tmChem: a high performance approach for chemical named entity recognition and normalization
Chemical compounds and drugs are an important class of entities in biomedical research
with great potential in a wide range of applications, including clinical medicine. Locating …
with great potential in a wide range of applications, including clinical medicine. Locating …
HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition
Named entity recognition (NER) is an important step in biomedical information extraction
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …
ChemSpot: a hybrid system for chemical named entity recognition
Motivation: The accurate identification of chemicals in text is important for many applications,
including computer-assisted reconstruction of metabolic networks or retrieval of information …
including computer-assisted reconstruction of metabolic networks or retrieval of information …