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Single-cell proteomics enabled by next-generation sequencing or mass spectrometry
In the last decade, single-cell RNA sequencing routinely performed on large numbers of
single cells has greatly advanced our understanding of the underlying heterogeneity of …
single cells has greatly advanced our understanding of the underlying heterogeneity of …
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments
Analyzing proteins from single cells by tandem mass spectrometry (MS) has recently
become technically feasible. While such analysis has the potential to accurately quantify …
become technically feasible. While such analysis has the potential to accurately quantify …
Exploration of cell state heterogeneity using single-cell proteomics through sensitivity-tailored data-independent acquisition
V Petrosius, P Aragon-Fernandez, N Üresin… - Nature …, 2023 - nature.com
Single-cell resolution analysis of complex biological tissues is fundamental to capture cell-
state heterogeneity and distinct cellular signaling patterns that remain obscured with …
state heterogeneity and distinct cellular signaling patterns that remain obscured with …
Top-down proteomics
Proteoforms, which arise from post-translational modifications, genetic polymorphisms and
RNA splice variants, play a pivotal role as drivers in biology. Understanding proteoforms is …
RNA splice variants, play a pivotal role as drivers in biology. Understanding proteoforms is …
scPROTEIN: a versatile deep graph contrastive learning framework for single-cell proteomics embedding
Single-cell proteomics sequencing technology sheds light on protein–protein interactions,
posttranslational modifications and proteoform dynamics in the cell. However, the …
posttranslational modifications and proteoform dynamics in the cell. However, the …
[HTML][HTML] An automated nanowell-array workflow for quantitative multiplexed single-cell proteomics sample preparation at high sensitivity
Multiplexed and label-free mass spectrometry–based approaches with single-cell resolution
have attributed surprising heterogeneity to presumed homogenous cell populations. Even …
have attributed surprising heterogeneity to presumed homogenous cell populations. Even …
Exploring functional protein covariation across single cells using nPOP
Background Many biological processes, such as cell division cycle and drug resistance, are
reflected in protein covariation across single cells. This covariation can be quantified and …
reflected in protein covariation across single cells. This covariation can be quantified and …
Pick-up single-cell proteomic analysis for quantifying up to 3000 proteins in a Mammalian cell
Y Wang, ZY Guan, SW Shi, YR Jiang, J Zhang… - Nature …, 2024 - nature.com
The shotgun proteomic analysis is currently the most promising single-cell protein
sequencing technology, however its identification level of~ 1000 proteins per cell is still …
sequencing technology, however its identification level of~ 1000 proteins per cell is still …
A review of the current state of single-cell proteomics and future perspective
R Ahmad, B Budnik - Analytical and Bioanalytical Chemistry, 2023 - Springer
Single-cell methodologies and technologies have started a revolution in biology which until
recently has primarily been limited to deep sequencing and imaging modalities. With the …
recently has primarily been limited to deep sequencing and imaging modalities. With the …
[HTML][HTML] Recent advances in the field of single-cell proteomics
The field of single-cell omics is rapidly progressing. Although DNA and RNA sequencing-
based methods have dominated the field to date, global proteome profiling has also entered …
based methods have dominated the field to date, global proteome profiling has also entered …