Gasdermins and pyroptosis in the kidney

EE Elias, B Lyons, DA Muruve - Nature Reviews Nephrology, 2023 - nature.com
Pyroptosis is a form of regulated cell death that is mediated by the membrane-targeting, pore-
forming gasdermin family of proteins. Pyroptosis was initially described as a caspase 1-and …

Applications of single-cell sequencing in cancer research: progress and perspectives

Y Lei, R Tang, J Xu, W Wang, B Zhang, J Liu… - Journal of hematology & …, 2021 - Springer
Single-cell sequencing, including genomics, transcriptomics, epigenomics, proteomics and
metabolomics sequencing, is a powerful tool to decipher the cellular and molecular …

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data

C Hu, T Li, Y Xu, X Zhang, F Li, J Bai… - Nucleic acids …, 2023 - academic.oup.com
Abstract CellMarker 2.0 (http://bio-bigdata. hrbmu. edu. cn/CellMarker or http://117.50.
127.228/CellMarker/) is an updated database that provides a manually curated collection of …

Deciphering cell–cell interactions and communication from gene expression

E Armingol, A Officer, O Harismendy… - Nature Reviews …, 2021 - nature.com
Cell–cell interactions orchestrate organismal development, homeostasis and single-cell
functions. When cells do not properly interact or improperly decode molecular messages …

Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

G Eraslan, E Drokhlyansky, S Anand, E Fiskin… - Science, 2022 - science.org
Understanding gene function and regulation in homeostasis and disease requires
knowledge of the cellular and tissue contexts in which genes are expressed. Here, we …

Inhibition of ACSS2-mediated histone crotonylation alleviates kidney fibrosis via IL-1β-dependent macrophage activation and tubular cell senescence

L Li, T **ang, J Guo, F Guo, Y Wu, H Feng, J Liu… - Nature …, 2024 - nature.com
Histone lysine crotonylation (Kcr), as a posttranslational modification, is widespread as
acetylation (Kac); however, its roles are largely unknown in kidney fibrosis. In this study, we …

Organoid-on-a-chip model of human ARPKD reveals mechanosensing pathomechanisms for drug discovery

K Hiratsuka, T Miyoshi, KT Kroll, NR Gupta… - Science …, 2022 - science.org
Organoids serve as a novel tool for disease modeling in three-dimensional multicellular
contexts. Static organoids, however, lack the requisite biophysical microenvironment such …

Mineralocorticoid receptor antagonists in diabetic kidney disease—Mechanistic and therapeutic effects

J Barrera-Chimal, I Lima-Posada, GL Bakris… - Nature Reviews …, 2022 - nature.com
Chronic kidney disease (CKD) is the leading complication in type 2 diabetes (T2D) and
current therapies that limit CKD progression and the development of cardiovascular disease …

Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury

Y Kirita, H Wu, K Uchimura, PC Wilson… - Proceedings of the …, 2020 - pnas.org
After acute kidney injury (AKI), patients either recover or alternatively develop fibrosis and
chronic kidney disease. Interactions between injured epithelia, stroma, and inflammatory …

Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

E Denisenko, BB Guo, M Jones, R Hou, L De Kock… - Genome biology, 2020 - Springer
Background Single-cell RNA sequencing has been widely adopted to estimate the cellular
composition of heterogeneous tissues and obtain transcriptional profiles of individual cells …