A literature review of gene function prediction by modeling gene ontology

Y Zhao, J Wang, J Chen, X Zhang, M Guo… - Frontiers in genetics, 2020 - frontiersin.org
Annotating the functional properties of gene products, ie, RNAs and proteins, is a
fundamental task in biology. The Gene Ontology database (GO) was developed to …

Combination therapeutics in complex diseases

B He, C Lu, G Zheng, X He, M Wang… - Journal of cellular …, 2016 - Wiley Online Library
The biological redundancies in molecular networks of complex diseases limit the efficacy of
many single drug therapies. Combination therapeutics, as a common therapeutic method …

A standard database for drug repositioning

AS Brown, CJ Patel - Scientific data, 2017 - nature.com
Drug repositioning, the process of discovering, validating, and marketing previously
approved drugs for new indications, is of growing interest to academia and industry due to …

The research on gene-disease association based on text-mining of PubMed

J Zhou, B Fu - BMC bioinformatics, 2018 - Springer
Background The associations between genes and diseases are of critical significance in
aspects of prevention, diagnosis and treatment. Although gene-disease relationships have …

A review of validation strategies for computational drug repositioning

AS Brown, CJ Patel - Briefings in bioinformatics, 2018 - academic.oup.com
Repositioning of previously approved drugs is a promising methodology because it reduces
the cost and duration of the drug development pipeline and reduces the likelihood of …

[HTML][HTML] Explainable artificial intelligence in high-throughput drug repositioning for subgroup stratifications with interventionable potential

Z Al-Taie, D Liu, JB Mitchem, C Papageorgiou… - Journal of Biomedical …, 2021 - Elsevier
Enabling precision medicine requires develo** robust patient stratification methods as
well as drugs tailored to homogeneous subgroups of patients from a heterogeneous …

MeSHDD: literature-based drug-drug similarity for drug repositioning

AS Brown, CJ Patel - Journal of the American Medical …, 2017 - academic.oup.com
Objective: Drug repositioning is a promising methodology for reducing the cost and duration
of the drug discovery pipeline. We sought to develop a computational repositioning method …

PrGeFNE: predicting disease-related genes by fast network embedding

J **ang, NR Zhang, JS Zhang, XY Lv, M Li - Methods, 2021 - Elsevier
Identifying disease-related genes is of importance for understanding of molecule
mechanisms of diseases, as well as diagnosis and treatment of diseases. Many …

[HTML][HTML] Gene function prediction based on gene ontology hierarchy preserving hashing

Y Zhao, G Fu, J Wang, M Guo, G Yu - Genomics, 2019 - Elsevier
Gene Ontology (GO) uses structured vocabularies (or terms) to describe the molecular
functions, biological roles, and cellular locations of gene products in a hierarchical ontology …

Annotation and detection of drug effects in text for pharmacovigilance

P Thompson, S Daikou, K Ueno… - Journal of …, 2018 - Springer
Pharmacovigilance (PV) databases record the benefits and risks of different drugs, as a
means to ensure their safe and effective use. Creating and maintaining such resources can …