[HTML][HTML] Diverse physiological roles of flavonoids in plant environmental stress responses and tolerance

A Shomali, S Das, N Arif, M Sarraf, N Zahra, V Yadav… - Plants, 2022 - mdpi.com
Flavonoids are characterized as the low molecular weight polyphenolic compounds
universally distributed in planta. They are a chemically varied group of secondary …

Structural variant calling: the long and the short of it

M Mahmoud, N Gobet, DI Cruz-Dávalos, N Mounier… - Genome biology, 2019 - Springer
Recent research into structural variants (SVs) has established their importance to medicine
and molecular biology, elucidating their role in various diseases, regulation of gene …

Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits

Y Huang, J He, Y Xu, W Zheng, S Wang, P Chen… - Nature Genetics, 2023 - nature.com
The orange subfamily (Aurantioideae) contains several Citrus species cultivated worldwide,
such as sweet orange and lemon. The origin of Citrus species has long been debated and …

Measuring and interpreting transposable element expression

S Lanciano, G Cristofari - Nature Reviews Genetics, 2020 - nature.com
Transposable elements (TEs) are insertional mutagens that contribute greatly to the
plasticity of eukaryotic genomes, influencing the evolution and adaptation of species as well …

Epigenetic regulation in plant abiotic stress responses

YN Chang, C Zhu, J Jiang, H Zhang… - Journal of integrative …, 2020 - Wiley Online Library
In eukaryotic cells, gene expression is greatly influenced by the dynamic chromatin
environment. Epigenetic mechanisms, including covalent modifications to DNA and histone …

[HTML][HTML] De novo domestication: an alternative route toward new crops for the future

AR Fernie, J Yan - Molecular plant, 2019 - cell.com
Current global agricultural production must feed over 7 billion people. However, productivity
varies greatly across the globe and is under threat from both increased competitions for land …

Regulatory activities of transposable elements: from conflicts to benefits

EB Chuong, NC Elde, C Feschotte - Nature Reviews Genetics, 2017 - nature.com
Transposable elements (TEs) are a prolific source of tightly regulated, biochemically active
non-coding elements, such as transcription factor-binding sites and non-coding RNAs. Many …

A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour

L Zhang, J Hu, X Han, J Li, Y Gao, CM Richards… - Nature …, 2019 - nature.com
A complete and accurate genome sequence provides a fundamental tool for functional
genomics and DNA-informed breeding. Here, we assemble a high-quality genome (contig …

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

JC Stein, Y Yu, D Copetti, DJ Zwickl, L Zhang… - Nature …, 2018 - nature.com
The genus Oryza is a model system for the study of molecular evolution over time scales
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …

MYB transcription factors as regulators of phenylpropanoid metabolism in plants

J Liu, A Osbourn, P Ma - Molecular plant, 2015 - cell.com
Phenylpropanoid-derived compounds represent a diverse family of secondary metabolites
that originate from phenylalanine. These compounds have roles in plant growth and …