[HTML][HTML] High-content CRISPR screening

C Bock, P Datlinger, F Chardon, MA Coelho… - Nature Reviews …, 2022 - nature.com
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …

CRISPR in cancer biology and therapy

A Katti, BJ Diaz, CM Caragine, NE Sanjana… - Nature Reviews …, 2022 - nature.com
Over the past decade, CRISPR has become as much a verb as it is an acronym,
transforming biomedical research and providing entirely new approaches for dissecting all …

CRISPR technologies for genome, epigenome and transcriptome editing

L Villiger, J Joung, L Koblan, J Weissman… - … Reviews Molecular Cell …, 2024 - nature.com
Our ability to edit genomes lags behind our capacity to sequence them, but the growing
understanding of CRISPR biology and its application to genome, epigenome and …

Multimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progression

PC Wilson, Y Muto, H Wu, A Karihaloo… - Nature …, 2022 - nature.com
The proximal tubule is a key regulator of kidney function and glucose metabolism. Diabetic
kidney disease leads to proximal tubule injury and changes in chromatin accessibility that …

Epigenome editing technologies for discovery and medicine

SR McCutcheon, D Rohm, N Iglesias… - Nature …, 2024 - nature.com
Epigenome editing has rapidly evolved in recent years, with diverse applications that
include elucidating gene regulation mechanisms, annotating coding and noncoding …

A universal deep-learning model for zinc finger design enables transcription factor reprogramming

DM Ichikawa, O Abdin, N Alerasool, M Kogenaru… - Nature …, 2023 - nature.com
Cys2His2 zinc finger (ZF) domains engineered to bind specific target sequences in the
genome provide an effective strategy for programmable regulation of gene expression, with …

Maximizing CRISPRi efficacy and accessibility with dual-sgRNA libraries and optimal effectors

JM Replogle, JL Bonnar, AN Pogson, CR Liem… - Elife, 2022 - elifesciences.org
CRISPR interference (CRISPRi) enables programmable, reversible, and titratable
repression of gene expression (knockdown) in mammalian cells. Initial CRISPRi-mediated …

Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function

GB Loeb, P Kathail, RW Shuai, R Chung, RJ Grona… - Nature Genetics, 2024 - nature.com
Kidney failure, the decrease of kidney function below a threshold necessary to support life, is
a major cause of morbidity and mortality. We performed a genome-wide association study …

CRISPR-Cas-mediated transcriptional modulation: The therapeutic promises of CRISPRa and CRISPRi

L Bendixen, TI Jensen, RO Bak - Molecular Therapy, 2023 - cell.com
The CRISPR-Cas system is commonly known for its ability to cleave DNA in a
programmable manner, which has democratized gene editing and facilitated recent …

Identification and functional characterization of transcriptional activators in human cells

N Alerasool, H Leng, ZY Lin, AC Gingras, M Taipale - Molecular cell, 2022 - cell.com
Transcription is orchestrated by thousands of transcription factors (TFs) and chromatin-
associated proteins, but how these are causally connected to transcriptional activation is …