Necessary and sufficient conditions for dynamical structure reconstruction of LTI networks

J Gonçalves, S Warnick - IEEE Transactions on Automatic …, 2008 - ieeexplore.ieee.org
This paper formulates and solves the network reconstruction problem for linear time-
invariant systems. The problem is motivated from a variety of disciplines, but it has recently …

Recurrent neural network for non-smooth convex optimization problems with application to the identification of genetic regulatory networks

L Cheng, ZG Hou, Y Lin, M Tan… - IEEE Transactions on …, 2011 - ieeexplore.ieee.org
A recurrent neural network is proposed for solving the non-smooth convex optimization
problem with the convex inequality and linear equality constraints. Since the objective …

Perturbation biology: inferring signaling networks in cellular systems

EJ Molinelli, A Korkut, W Wang, ML Miller… - PLoS computational …, 2013 - journals.plos.org
We present a powerful experimental-computational technology for inferring network models
that predict the response of cells to perturbations, and that may be useful in the design of …

[BOK][B] Feedback control in systems biology

C Cosentino, D Bates - 2011 - books.google.com
Like engineering systems, biological systems must also operate effectively in the presence
of internal and external uncertainty—such as genetic mutations or temperature changes, for …

Learning structure in gene expression data using deep architectures, with an application to gene clustering

A Gupta, H Wang… - 2015 IEEE international …, 2015 - ieeexplore.ieee.org
Genes play a central role in all biological processes. DNA microarray technology has made
it possible to study the expression behavior of thousands of genes in one go. Often, gene …

Topology identification of directed dynamical networks via power spectral analysis

S Shahrampour, VM Preciado - IEEE Transactions on …, 2014 - ieeexplore.ieee.org
We address the problem of identifying the topology of an unknown weighted, directed
network of LTI systems stimulated by wide-sense stationary noises of unknown power …

Topology identification for fractional complex networks with synchronization in finite time based on adaptive observers and event-triggered control

J Bai, H Wu, J Cao - Neurocomputing, 2022 - Elsevier
This paper considers the topology identification issue for fractional complex networks
(FCNs) based on the synchronization in finite-time. Firstly, two lemmas with respect to the …

State estimation for genetic regulatory networks with mode-dependent leakage delays, time-varying delays, and Markovian jum** parameters

TH Lee, S Lakshmanan, JH Park… - IEEE transactions on …, 2013 - ieeexplore.ieee.org
This paper considers the state estimation problem for Markovian jum** genetic regulatory
networks (GRNs) with mode-dependent leakage and time-varying delays. In order to …

[HTML][HTML] Topology identification of heterogeneous networks: Identifiability and reconstruction

HJ van Waarde, P Tesi, MK Camlibel - Automatica, 2021 - Elsevier
This paper addresses the problem of identifying the graph structure of a dynamical network
using measured input/output data. This problem is known as topology identification and has …

Blind identification of stochastic block models from dynamical observations

MT Schaub, S Segarra, JN Tsitsiklis - SIAM Journal on Mathematics of Data …, 2020 - SIAM
We consider a blind identification problem in which we aim to recover a statistical model of a
network without knowledge of the network's edges but based solely on nodal observations …