A review of methods and databases for metagenomic classification and assembly
Microbiome research has grown rapidly over the past decade, with a proliferation of new
methods that seek to make sense of large, complex data sets. Here, we survey two of the …
methods that seek to make sense of large, complex data sets. Here, we survey two of the …
Scaling biodiversity responses to hydrological regimes
Of all ecosystems, freshwaters support the most dynamic and highly concentrated
biodiversity on Earth. These attributes of freshwater biodiversity along with increasing …
biodiversity on Earth. These attributes of freshwater biodiversity along with increasing …
[HTML][HTML] A conceptual guide to measuring species diversity
Three metrics of species diversity–species richness, the Shannon index and the Simpson
index–are still widely used in ecology, despite decades of valid critiques leveled against …
index–are still widely used in ecology, despite decades of valid critiques leveled against …
Biodiversity response to forest structure and management: Comparing species richness, conservation relevant species and functional diversity as metrics in forest …
Aim We investigated the consistency between richness and trait-based diversity metrics in
capturing the effects of management-related habitat factors on biodiversity. The choice of …
capturing the effects of management-related habitat factors on biodiversity. The choice of …
Sputum microbiome is associated with 1-year mortality after chronic obstructive pulmonary disease hospitalizations
FS Leitao Filho, NM Alotaibi, D Ngan… - American journal of …, 2019 - atsjournals.org
Rationale: Lung dysbiosis promotes airway inflammation and decreased local immunity,
potentially playing a role in the pathogenesis of acute exacerbations of chronic obstructive …
potentially playing a role in the pathogenesis of acute exacerbations of chronic obstructive …
The species pool concept as a framework for studying patterns of plant diversity
M Zobel - Journal of Vegetation Science, 2016 - Wiley Online Library
Co‐existence theories fail to adequately explain observed community patterns (diversity and
composition) because they mainly address local extinctions. For a more complete …
composition) because they mainly address local extinctions. For a more complete …
An empirically derived method for measuring human gut microbiome alpha diversity: Demonstrated utility in predicting health-related outcomes among a human …
The human gut microbiome has emerged as a potential key factor involved in the
manifestation of physical and mental health. Despite an explosion of cross-disciplinary …
manifestation of physical and mental health. Despite an explosion of cross-disciplinary …
Hotspots within hotspots: Endemic plant richness, environmental drivers, and implications for conservation
Detecting smaller hotspots within larger hotspots could be an essential tool to focus
conservation efforts. In this study, we identified hotspots at two scales of analysis within the …
conservation efforts. In this study, we identified hotspots at two scales of analysis within the …
The potential of cleptoparasitic bees as indicator taxa for assessing bee communities
Many factors affect bee diversity and abundance, and knowledge of these is crucial for
maintaining healthy bee communities. However, there are few means to fully evaluate the …
maintaining healthy bee communities. However, there are few means to fully evaluate the …
Meta-studies in land use science: Current coverage and prospects
Land use science has traditionally used case-study approaches for in-depth investigation of
land use change processes and impacts. Meta-studies synthesize findings across case …
land use change processes and impacts. Meta-studies synthesize findings across case …