Nutrient sensing and TOR signaling in yeast and mammals

A González, MN Hall - The EMBO journal, 2017 - embopress.org
Coordinating cell growth with nutrient availability is critical for cell survival. The evolutionarily
conserved TOR (target of rapamycin) controls cell growth in response to nutrients, in …

The N‐end rule pathway and regulation by proteolysis

A Varshavsky - Protein science, 2011 - Wiley Online Library
The N‐end rule relates the regulation of the in vivo half‐life of a protein to the identity of its N‐
terminal residue. Degradation signals (degrons) that are targeted by the N‐end rule pathway …

As extracellular glutamine levels decline, asparagine becomes an essential amino acid

NN Pavlova, S Hui, JM Ghergurovich, J Fan… - Cell metabolism, 2018 - cell.com
When mammalian cells are deprived of glutamine, exogenous asparagine rescues cell
survival and growth. Here we report that this rescue results from use of asparagine in protein …

Regulation of Amino Acid, Nucleotide, and Phosphate Metabolism in Saccharomyces cerevisiae

PO Ljungdahl, B Daignan-Fornier - Genetics, 2012 - academic.oup.com
Ever since the beginning of biochemical analysis, yeast has been a pioneering model for
studying the regulation of eukaryotic metabolism. During the last three decades, the …

Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments

CA Jackson, DM Castro, GA Saldi, R Bonneau… - elife, 2020 - elifesciences.org
Understanding how gene expression programs are controlled requires identifying regulatory
relationships between transcription factors and target genes. Gene regulatory networks are …

Metabolic heterogeneity and cross-feeding within isogenic yeast populations captured by DILAC

S Kamrad, C Correia-Melo, L Szyrwiel, SK Aulakh… - Nature …, 2023 - nature.com
Genetically identical cells are known to differ in many physiological parameters such as
growth rate and drug tolerance. Metabolic specialization is believed to be a cause of such …

Multidimensional characterization of inducible promoters and a highly light-sensitive LOV-transcription factor

V Gligorovski, A Sadeghi, SJ Rahi - Nature Communications, 2023 - nature.com
The ability to independently control the expression of different genes is important for
quantitative biology. Using budding yeast, we characterize GAL1pr, GALL, MET3pr, CUP1pr …

Functional metabolomics describes the yeast biosynthetic regulome

M Mülleder, E Calvani, MT Alam, RK Wang… - Cell, 2016 - cell.com
Genome-metabolism interactions enable cell growth. To probe the extent of these
interactions and delineate their functional contributions, we quantified the Saccharomyces …

Nitrogen source activates TOR (target of rapamycin) complex 1 via glutamine and independently of Gtr/Rag proteins

D Stracka, S Jozefczuk, F Rudroff, U Sauer… - Journal of Biological …, 2014 - ASBMB
The evolutionary conserved TOR complex 1 (TORC1) activates cell growth in response to
nutrients. In yeast, TORC1 responds to the nitrogen source via a poorly understood …

Regulation of amino acid transport in Saccharomyces cerevisiae

F Bianchi, JS van't Klooster, SJ Ruiz… - … and Molecular Biology …, 2019 - Am Soc Microbiol
We review the mechanisms responsible for amino acid homeostasis in Saccharomyces
cerevisiae and other fungi. Amino acid homeostasis is essential for cell growth and survival …