Computational programs for predicting RNA sequences with desired folding properties have
been extensively developed and expanded in the past several years. Given a secondary …

The RNA inverse folding problem involves discovering a nucleotide sequence that folds into
a desired target structure. Although numerous computational methods have been proposed …

Motivation RNA design is a key technique to achieve new functionality in fields like synthetic
biology or biotechnology. Computational tools could help to find such RNA sequences but …

Motivation RNA design is the search for a sequence or set of sequences that will fold to
desired structure, also known as the inverse problem of RNA folding. However, the …

Background We study in this work the inverse folding problem for RNA, which is the
discovery of sequences that fold into given target secondary structures. Results We …

Designing RNA sequences that form a specific structure remains a challenge. Current
computational methods often struggle with the complexity of RNA structures, especially …

Several algorithms for RNA inverse folding have been used to design synthetic riboswitches,
ribozymes and thermoswitches, whose activity has been experimentally validated. The …

RNA-protein binding plays an important role in regulating protein activity by affecting
localization and stability. While proteins are usually targeted via small molecules or other …

Ribonucleic acid (RNA) sequence controls many biological functions in the body of living
organisms including protein synthesis and gene regulations. The sequence folds according …

Higher-dimensional sliding puzzles are constructed on the vertices of a $ d $-dimensional
hypercube, where $2^ dl $ vertices are distinctly coloured. Rings with the same colours are …