Protein folding and misfolding

CM Dobson - Nature, 2003 - nature.com
The manner in which a newly synthesized chain of amino acids transforms itself into a
perfectly folded protein depends both on the intrinsic properties of the amino-acid sequence …

Nonspecific binding—fundamental concepts and consequences for biosensing applications

A Frutiger, A Tanno, S Hwu, RF Tiefenauer… - Chemical …, 2021 - ACS Publications
Nature achieves differentiation of specific and nonspecific binding in molecular interactions
through precise control of biomolecules in space and time. Artificial systems such as …

From Levinthal to pathways to funnels

KA Dill, HS Chan - Nature structural biology, 1997 - nature.com
From Levinthalto pathways to funnels Page 1 TS 9 1997 Nature Publishing Group http://www.nature.com/nsmb
perspective From Levinthalto pathways to funnels Ken A. Dill and Hue Sun Chan A new …

Theory of protein folding: the energy landscape perspective

JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …

Torsion angle dynamics for NMR structure calculation with the new program DYANA

P Güntert, C Mumenthaler, K Wüthrich - Journal of molecular biology, 1997 - Elsevier
The new program Dyana (DYnamics Algorithm for Nmr Applications) for efficient calculation
of three-dimensional protein and nucleic acid structures from distance constraints and …

Energy landscapes

DJ Wales - Atomic clusters and nanoparticles. Agregats atomiques …, 2002 - Springer
This overview of energy landscapes will focus on some rigorous properties of potential
energy surfaces (PES's), especially the symmetry properties of steepest-descent paths, and …

Cell-to-cell transmission of pathogenic proteins in neurodegenerative diseases

JL Guo, VMY Lee - Nature medicine, 2014 - nature.com
A common feature of many neurodegenerative diseases is the deposition of β-sheet-rich
amyloid aggregates formed by proteins specific to these diseases. These protein aggregates …

The yeast cell-cycle network is robustly designed

F Li, T Long, Y Lu, Q Ouyang… - Proceedings of the …, 2004 - National Acad Sciences
The interactions between proteins, DNA, and RNA in living cells constitute molecular
networks that govern various cellular functions. To investigate the global dynamical …

Principles of protein folding, misfolding and aggregation

CM Dobson - Seminars in cell & developmental biology, 2004 - Elsevier
This review summarises our current understanding of the underlying and universal
mechanism by which newly synthesised proteins achieve their biologically functional states …

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations

F Noé, C Schütte, E Vanden-Eijnden… - Proceedings of the …, 2009 - National Acad Sciences
Characterizing the equilibrium ensemble of folding pathways, including their relative
probability, is one of the major challenges in protein folding theory today. Although this …