DNA confinement in nanochannels: physics and biological applications

W Reisner, JN Pedersen… - Reports on progress in …, 2012 - iopscience.iop.org
DNA is the central storage molecule of genetic information in the cell, and reading that
information is a central problem in biology. While sequencing technology has made …

Polymers with spatial or topological constraints: Theoretical and computational results

C Micheletti, D Marenduzzo, E Orlandini - Physics Reports, 2011 - Elsevier
In this review, we provide an organized summary of the theoretical and computational
results that are available for polymers subject to spatial or topological constraints. Because …

Beyond gel electrophoresis: Microfluidic separations, fluorescence burst analysis, and DNA stretching

KD Dorfman, SB King, DW Olson, JDP Thomas… - Chemical …, 2013 - ACS Publications
This Review addresses methods for obtaining sequence information directly from
unamplified genomic length DNA. Our generic starting point is a large piece of DNA that …

DNA in nanochannels—directly visualizing genomic information

F Persson, JO Tegenfeldt - Chemical Society Reviews, 2010 - pubs.rsc.org
The power of nanofluidic channels to analyze DNA is described along with practical
experimental hints. As an introduction, a general overview is given on conventional DNA …

Simulation of DNA extension in nanochannels

Y Wang, DR Tree, KD Dorfman - Macromolecules, 2011 - ACS Publications
We have used a realistic model for double-stranded DNA and Monte Carlo simulations to
compute the extension (mean span) of a DNA molecule confined in a nanochannel over the …

DNA manipulation, sorting, and map** in nanofluidic systems

SL Levy, HG Craighead - Chemical Society Reviews, 2010 - pubs.rsc.org
Fluidic systems with nanometre length scales enable sensitive analysis of DNA molecules.
Nanofluidic systems have been used to probe conformational, dynamic, and entropic …

Optical DNA map** in nanofluidic devices: principles and applications

V Müller, F Westerlund - Lab on a Chip, 2017 - pubs.rsc.org
Optical DNA map** has over the last decade emerged as a very powerful tool for
obtaining long range sequence information from single DNA molecules. In optical DNA …

DNA in nanochannels: theory and applications

K Frykholm, V Müller, KK Sriram… - Quarterly Reviews of …, 2022 - cambridge.org
Nanofluidic structures have over the last two decades emerged as a powerful platform for
detailed analysis of DNA on the kilobase pair length scale. When DNA is confined to a …

The polymer physics of single DNA confined in nanochannels

L Dai, CB Renner, PS Doyle - Advances in colloid and interface science, 2016 - Elsevier
In recent years, applications and experimental studies of DNA in nanochannels have
stimulated the investigation of the polymer physics of DNA in confinement. Recent advances …

Single-molecule optical genome map** in nanochannels: multidisciplinarity at the nanoscale

J Jeffet, S Margalit, Y Michaeli… - Essays in …, 2021 - portlandpress.com
The human genome contains multiple layers of information that extend beyond the genetic
sequence. In fact, identical genetics do not necessarily yield identical phenotypes as evident …