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Comprehensive review of models and methods for inferences in bio-chemical reaction networks
The key processes in biological and chemical systems are described by networks of
chemical reactions. From molecular biology to biotechnology applications, computational …
chemical reactions. From molecular biology to biotechnology applications, computational …
Empirical validation of agent-based models
The literature on agent-based models has been highly successful in replicating many
stylized facts of financial and macroeconomic time series. Over the past decade, however …
stylized facts of financial and macroeconomic time series. Over the past decade, however …
Computing Bayes: From then 'til now
This paper takes the reader on a journey through the history of Bayesian computation, from
the 18th century to the present day. Beginning with the one-dimensional integral first …
the 18th century to the present day. Beginning with the one-dimensional integral first …
Adaptive, delayed-acceptance MCMC for targets with expensive likelihoods
When conducting Bayesian inference, delayed-acceptance (DA) Metropolis–Hastings (MH)
algorithms and DA pseudo-marginal MH algorithms can be applied when it is …
algorithms and DA pseudo-marginal MH algorithms can be applied when it is …
Computing Bayes: Bayesian computation from 1763 to the 21st century
The Bayesian statistical paradigm uses the language of probability to express uncertainty
about the phenomena that generate observed data. Probability distributions thus …
about the phenomena that generate observed data. Probability distributions thus …
Accelerating Metropolis-Hastings algorithms by delayed acceptance
MCMC algorithms such as Metropolis-Hastings algorithms are slowed down by the
computation of complex target distributions as exemplified by huge datasets. We offer in this …
computation of complex target distributions as exemplified by huge datasets. We offer in this …
A survey of Monte Carlo methods for noisy and costly densities with application to reinforcement learning and ABC
This survey gives an overview of Monte Carlo methodologies using surrogate models, for
dealing with densities that are intractable, costly, and/or noisy. This type of problem can be …
dealing with densities that are intractable, costly, and/or noisy. This type of problem can be …
Multifidelity multilevel Monte Carlo to accelerate approximate Bayesian parameter inference for partially observed stochastic processes
Abstract Models of stochastic processes are widely used in almost all fields of science.
Theory validation, parameter estimation, and prediction all require model calibration and …
Theory validation, parameter estimation, and prediction all require model calibration and …
Markov chain Monte Carlo with Gaussian processes for fast parameter estimation and uncertainty quantification in a 1D fluid‐dynamics model of the pulmonary …
LM Paun, D Husmeier - International journal for numerical …, 2021 - Wiley Online Library
The past few decades have witnessed an explosive synergy between physics and the life
sciences. In particular, physical modelling in medicine and physiology is a topical research …
sciences. In particular, physical modelling in medicine and physiology is a topical research …
Speeding up MCMC by delayed acceptance and data subsampling
The complexity of the Metropolis–Hastings (MH) algorithm arises from the requirement of a
likelihood evaluation for the full dataset in each iteration. One solution has been proposed to …
likelihood evaluation for the full dataset in each iteration. One solution has been proposed to …