A review of progress in single particle tracking: from methods to biophysical insights

C Manzo, MF Garcia-Parajo - Reports on progress in physics, 2015 - iopscience.iop.org
Optical microscopy has for centuries been a key tool to study living cells with minimum
invasiveness. The advent of single molecule techniques over the past two decades has …

Interaction dynamics of intrinsically disordered proteins from single-molecule spectroscopy

A Chowdhury, D Nettels… - Annual review of …, 2023 - annualreviews.org
Many proteins contain large structurally disordered regions or are entirely disordered under
physiological conditions. The functions of these intrinsically disordered proteins (IDPs) often …

Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

G Agam, C Gebhardt, M Popara, R Mächtel, J Folz… - Nature …, 2023 - nature.com
Single-molecule Förster-resonance energy transfer (smFRET) experiments allow the study
of biomolecular structure and dynamics in vitro and in vivo. We performed an international …

Extreme disorder in an ultrahigh-affinity protein complex

A Borgia, MB Borgia, K Bugge, VM Kissling… - Nature, 2018 - nature.com
Molecular communication in biology is mediated by protein interactions. According to the
current paradigm, the specificity and affinity required for these interactions are encoded in …

Shortwave infrared polymethine fluorophores matched to excitation lasers enable non-invasive, multicolour in vivo imaging in real time

ED Cosco, AL Spearman, S Ramakrishnan… - Nature …, 2020 - nature.com
High-resolution, multiplexed experiments are a staple in cellular imaging. Analogous
experiments in animals are challenging, however, due to substantial scattering and …

A self-assembled nanoscale robotic arm controlled by electric fields

E Kopperger, J List, S Madhira, F Rothfischer… - Science, 2018 - science.org
The use of dynamic, self-assembled DNA nanostructures in the context of nanorobotics
requires fast and reliable actuation mechanisms. We therefore created a 55-nanometer–by …

Conformational ensembles of an intrinsically disordered protein consistent with NMR, SAXS, and single-molecule FRET

GNW Gomes, M Krzeminski, A Namini… - Journal of the …, 2020 - ACS Publications
Intrinsically disordered proteins (IDPs) have fluctuating heterogeneous conformations, which
makes their structural characterization challenging. Although challenging, characterization …

Molecular force spectroscopy with a DNA origami–based nanoscopic force clamp

PC Nickels, B Wünsch, P Holzmeister, W Bae… - Science, 2016 - science.org
Forces in biological systems are typically investigated at the single-molecule level with
atomic force microscopy or optical and magnetic tweezers, but these techniques suffer from …

A practical guide to single-molecule FRET

R Roy, S Hohng, T Ha - Nature methods, 2008 - nature.com
Single-molecule fluorescence resonance energy transfer (smFRET) is one of the most
general and adaptable single-molecule techniques. Despite the explosive growth in the …

Condensin-and replication-mediated bacterial chromosome folding and origin condensation revealed by Hi-C and super-resolution imaging

M Marbouty, A Le Gall, DI Cattoni, A Cournac, A Koh… - Molecular cell, 2015 - cell.com
Chromosomes of a broad range of species, from bacteria to mammals, are structured by
large topological domains whose precise functional roles and regulatory mechanisms …