Metagenomics-a guide from sampling to data analysis
Metagenomics applies a suite of genomic technologies and bioinformatics tools to directly
access the genetic content of entire communities of organisms. The field of metagenomics …
access the genetic content of entire communities of organisms. The field of metagenomics …
The present and future of de novo whole-genome assembly
The human reference genome represents only a small number of individuals, which limits its
usefulness for genoty**. We present a method named HISAT2 (hierarchical indexing for …
usefulness for genoty**. We present a method named HISAT2 (hierarchical indexing for …
The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication
High oil and protein content make tetraploid peanut a leading oil and food legume. Here we
report a high-quality peanut genome sequence, comprising 2.54 Gb with 20 …
report a high-quality peanut genome sequence, comprising 2.54 Gb with 20 …
Transcriptional and epigenetic decoding of the microglial aging process
As important immune cells, microglia undergo a series of alterations during aging that
increase the susceptibility to brain dysfunctions. However, the longitudinal characteristics of …
increase the susceptibility to brain dysfunctions. However, the longitudinal characteristics of …
Microplastics reduce nitrogen uptake in peanut plants by damaging root cells and impairing soil nitrogen cycling
Y Liu, F Xu, L Ding, G Zhang, B Bai, Y Han… - Journal of Hazardous …, 2023 - Elsevier
Microplastic (MP) pollution severely impairs the sustainable development of modern
agriculture. However, the mechanisms underlying the effects of MP contaminants on nutrient …
agriculture. However, the mechanisms underlying the effects of MP contaminants on nutrient …
Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements
The intensive use of antibiotics results in their continuous release into the environment and
the subsequent widespread occurrence of antibiotic resistant bacteria (ARB), antibiotic …
the subsequent widespread occurrence of antibiotic resistant bacteria (ARB), antibiotic …
Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
Plant genomes are often characterized by a high level of repetitiveness and polyploid
nature. Consequently, creating genome assemblies for plant genomes is challenging. The …
nature. Consequently, creating genome assemblies for plant genomes is challenging. The …
Functional and metabolic alterations of gut microbiota in children with new-onset type 1 diabetes
X Yuan, R Wang, B Han, CJ Sun, R Chen… - Nature …, 2022 - nature.com
Gut dysbiosis has been linked to type 1 diabetes (T1D); however, microbial capacity in T1D
remains unclear. Here, we integratively profiled gut microbial functional and metabolic …
remains unclear. Here, we integratively profiled gut microbial functional and metabolic …
Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
Long-read technologies hold the promise to obtain more complete genome assemblies and
to make them easier. Coupled with long-range technologies, they can reveal the architecture …
to make them easier. Coupled with long-range technologies, they can reveal the architecture …