Peptidomics
Peptides are biopolymers, typically consisting of 2–50 amino acids. They are biologically
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …
Alternative ORFs and small ORFs: shedding light on the dark proteome
Traditional annotation of protein-encoding genes relied on assumptions, such as one open
reading frame (ORF) encodes one protein and minimal lengths for translated proteins. With …
reading frame (ORF) encodes one protein and minimal lengths for translated proteins. With …
Biogeography of nodulated legumes and their nitrogen‐fixing symbionts
Contents Summary 40 I. Introduction 40 II. Recent changes in the taxonomy of legume
genera 41 III. Latitudinal variations in the distribution of nodulated legumes 44 IV …
genera 41 III. Latitudinal variations in the distribution of nodulated legumes 44 IV …
dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data
The last 18 months, or more, have seen a profound shift in our global experience, with many
of us navigating a once-in-100-year pandemic. To date, COVID-19 remains a life …
of us navigating a once-in-100-year pandemic. To date, COVID-19 remains a life …
An improved genome release (version Mt4. 0) for the model legume Medicago truncatula
Background Medicago truncatula, a close relative of alfalfa, is a preeminent model for
studying nitrogen fixation, symbiosis, and legume genomics. The Medicago sequencing …
studying nitrogen fixation, symbiosis, and legume genomics. The Medicago sequencing …
Long noncoding RNA transcriptome of plants
J Liu, H Wang, NH Chua - Plant biotechnology journal, 2015 - Wiley Online Library
Since their discovery more than two decades ago, animal long noncoding RNA s (lnc RNA
s) have emerged as important regulators of many biological processes. Recently, a large …
s) have emerged as important regulators of many biological processes. Recently, a large …
Full‐length de novo assembly of RNA‐seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species
Next‐generation sequencing technologies allow an almost exhaustive survey of the
transcriptome, even in species with no available genome sequence. To produce a Unigene …
transcriptome, even in species with no available genome sequence. To produce a Unigene …
The rhizobium-legume symbiosis: Co-opting successful stress management
JP Hawkins, IJ Oresnik - Frontiers in Plant Science, 2022 - frontiersin.org
The interaction of bacteria with plants can result in either a positive, negative, or neutral
association. The rhizobium-legume interaction is a well-studied model system of a process …
association. The rhizobium-legume interaction is a well-studied model system of a process …
Loss of the nodule-specific cysteine rich peptide, NCR169, abolishes symbiotic nitrogen fixation in the Medicago truncatula dnf7 mutant
Host compatible rhizobia induce the formation of legume root nodules, symbiotic organs
within which intracellular bacteria are present in plant-derived membrane compartments …
within which intracellular bacteria are present in plant-derived membrane compartments …
Microproteins: overlooked regulators of physiology and disease
KR Hassel, O Brito-Estrada, CA Makarewich - Iscience, 2023 - cell.com
Ongoing efforts to generate a complete and accurate annotation of the genome have
revealed a significant blind spot for small proteins (< 100 amino acids) originating from short …
revealed a significant blind spot for small proteins (< 100 amino acids) originating from short …