Peptidomics

R Hellinger, A Sigurdsson, W Wu… - Nature Reviews …, 2023 - nature.com
Peptides are biopolymers, typically consisting of 2–50 amino acids. They are biologically
produced by the cellular ribosomal machinery or by non-ribosomal enzymes and …

Alternative ORFs and small ORFs: shedding light on the dark proteome

MW Orr, Y Mao, G Storz, SB Qian - Nucleic acids research, 2020 - academic.oup.com
Traditional annotation of protein-encoding genes relied on assumptions, such as one open
reading frame (ORF) encodes one protein and minimal lengths for translated proteins. With …

Biogeography of nodulated legumes and their nitrogen‐fixing symbionts

JI Sprent, J Ardley, EK James - New Phytologist, 2017 - Wiley Online Library
Contents Summary 40 I. Introduction 40 II. Recent changes in the taxonomy of legume
genera 41 III. Latitudinal variations in the distribution of nodulated legumes 44 IV …

dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data

JH Jhong, L Yao, Y Pang, Z Li, CR Chung… - Nucleic acids …, 2022 - academic.oup.com
The last 18 months, or more, have seen a profound shift in our global experience, with many
of us navigating a once-in-100-year pandemic. To date, COVID-19 remains a life …

An improved genome release (version Mt4. 0) for the model legume Medicago truncatula

H Tang, V Krishnakumar, S Bidwell, B Rosen, A Chan… - BMC genomics, 2014 - Springer
Background Medicago truncatula, a close relative of alfalfa, is a preeminent model for
studying nitrogen fixation, symbiosis, and legume genomics. The Medicago sequencing …

Long noncoding RNA transcriptome of plants

J Liu, H Wang, NH Chua - Plant biotechnology journal, 2015 - Wiley Online Library
Since their discovery more than two decades ago, animal long noncoding RNA s (lnc RNA
s) have emerged as important regulators of many biological processes. Recently, a large …

Full‐length de novo assembly of RNA‐seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species

S Alves‐Carvalho, G Aubert, S Carrere… - The Plant …, 2015 - Wiley Online Library
Next‐generation sequencing technologies allow an almost exhaustive survey of the
transcriptome, even in species with no available genome sequence. To produce a Unigene …

The rhizobium-legume symbiosis: Co-opting successful stress management

JP Hawkins, IJ Oresnik - Frontiers in Plant Science, 2022 - frontiersin.org
The interaction of bacteria with plants can result in either a positive, negative, or neutral
association. The rhizobium-legume interaction is a well-studied model system of a process …

Loss of the nodule-specific cysteine rich peptide, NCR169, abolishes symbiotic nitrogen fixation in the Medicago truncatula dnf7 mutant

B Horváth, Á Domonkos, A Kereszt… - Proceedings of the …, 2015 - National Acad Sciences
Host compatible rhizobia induce the formation of legume root nodules, symbiotic organs
within which intracellular bacteria are present in plant-derived membrane compartments …

Microproteins: overlooked regulators of physiology and disease

KR Hassel, O Brito-Estrada, CA Makarewich - Iscience, 2023 - cell.com
Ongoing efforts to generate a complete and accurate annotation of the genome have
revealed a significant blind spot for small proteins (< 100 amino acids) originating from short …