[HTML][HTML] How genomics can help biodiversity conservation

K Theissinger, C Fernandes, G Formenti, I Bista… - Trends in genetics, 2023 - cell.com
The availability of public genomic resources can greatly assist biodiversity assessment,
conservation, and restoration efforts by providing evidence for scientifically informed …

Landscape genomics to enable conservation actions: the California Conservation Genomics Project

HB Shaffer, E Toffelmier, RB Corbett-Detig… - Journal of …, 2022 - academic.oup.com
Abstract The California Conservation Genomics Project (CCGP) is a unique, critically
important step forward in the use of comprehensive landscape genetic data to modernize …

Plant pangenomes for crop improvement, biodiversity and evolution

M Schreiber, M Jayakodi, N Stein… - Nature Reviews Genetics, 2024 - nature.com
Plant genome sequences catalogue genes and the genetic elements that regulate their
expression. Such inventories further research aims as diverse as map** the molecular …

Quality assessment of gene repertoire annotations with OMArk

Y Nevers, A Warwick Vesztrocy, V Rossier… - Nature …, 2024 - nature.com
In the era of biodiversity genomics, it is crucial to ensure that annotations of protein-coding
gene repertoires are accurate. State-of-the-art tools to assess genome annotations measure …

Evolutionary genomics of oceanic island radiations

J Cerca, DD Cotoras, VC Bieker, R De-Kayne… - Trends in ecology & …, 2023 - cell.com
A recurring feature of oceanic archipelagos is the presence of adaptive radiations that
generate endemic, species-rich clades that can offer outstanding insight into the links …

Pangenome graphs and their applications in biodiversity genomics

S Secomandi, GR Gallo, R Rossi… - Nature Genetics, 2025 - nature.com
Complete datasets of genetic variants are key to biodiversity genomic studies. Long-read
sequencing technologies allow the routine assembly of highly contiguous, haplotype …

The impact of chromosomal rearrangements in speciation: from micro-to macroevolution

K Lucek, MD Giménez, M Joron… - Cold Spring …, 2023 - cshperspectives.cshlp.org
Chromosomal rearrangements (CRs) have been known since almost the beginning of
genetics. While an important role for CRs in speciation has been suggested, evidence …

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

D Larivière, L Abueg, N Brajuka, C Gallardo-Alba… - Nature …, 2024 - nature.com
The Earth BioGenome Project aims to produce reference genomes for all~ 1.8 million known
eukaryotic species over the next decade 1–4. Achieving this goal will require the current …

Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution

KR Bredemeyer, LD Hillier, AJ Harris, GM Hughes… - Nature …, 2023 - nature.com
The role of structurally dynamic genomic regions in speciation is poorly understood due to
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …

A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics

Y Mao, G Zhang - Nature methods, 2022 - nature.com
The release of the first telomere-to-telomere (T2T) human genome sequence marks a
milestone for human genomics research and holds promise of complete genomes for …