[HTML][HTML] Machine learning for biochemical engineering: A review
The field of machine learning is comprised of techniques, which have proven powerful
approaches to knowledge discovery and construction of 'digital twins' in the highly …
approaches to knowledge discovery and construction of 'digital twins' in the highly …
Building Digital Twins for Cardiovascular Health: from principles to clinical impact
The past several decades have seen rapid advances in diagnosis and treatment of
cardiovascular diseases and stroke, enabled by technological breakthroughs in imaging …
cardiovascular diseases and stroke, enabled by technological breakthroughs in imaging …
Mathematical modeling of epidemic diseases; a case study of the COVID-19 coronavirus
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CO2 photoreduction kinetics are presented in this Perspective. Intrinsic kinetic models that …
CO2 photoreduction kinetics are presented in this Perspective. Intrinsic kinetic models that …
Calibration of ionic and cellular cardiac electrophysiology models
Cardiac electrophysiology models are among the most mature and well‐studied
mathematical models of biological systems. This maturity is bringing new challenges as …
mathematical models of biological systems. This maturity is bringing new challenges as …
Benchmarking optimization methods for parameter estimation in large kinetic models
Motivation Kinetic models contain unknown parameters that are estimated by optimizing the
fit to experimental data. This task can be computationally challenging due to the presence of …
fit to experimental data. This task can be computationally challenging due to the presence of …
AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology
Motivation: Many problems of interest in dynamic modeling and control of biological systems
can be posed as non-linear optimization problems subject to algebraic and dynamic …
can be posed as non-linear optimization problems subject to algebraic and dynamic …
Bridging the gap between complexity science and clinical practice by formalizing idiographic theories: a computational model of functional analysis
Background The past decades of research have seen an increase in statistical tools to
explore the complex dynamics of mental health from patient data, yet the application of these …
explore the complex dynamics of mental health from patient data, yet the application of these …
Scalable parameter estimation for genome-scale biochemical reaction networks
Mechanistic mathematical modeling of biochemical reaction networks using ordinary
differential equation (ODE) models has improved our understanding of small-and medium …
differential equation (ODE) models has improved our understanding of small-and medium …
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems
Background Kinetic models of biochemical systems usually consist of ordinary differential
equations that have many unknown parameters. Some of these parameters are often …
equations that have many unknown parameters. Some of these parameters are often …