Big data and tactical analysis in elite soccer: future challenges and opportunities for sports science

R Rein, D Memmert - SpringerPlus, 2016 - Springer
Until recently tactical analysis in elite soccer were based on observational data using
variables which discard most contextual information. Analyses of team tactics require …

[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation

V Raghavan, L Kraft, F Mesny… - Briefings in …, 2022 - academic.oup.com
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

E Afgan, D Baker, B Batut, M Van Den Beek… - Nucleic acids …, 2018 - academic.oup.com
Abstract Galaxy (homepage: https://galaxyproject. org, main public server: https://usegalaxy.
org) is a web-based scientific analysis platform used by tens of thousands of scientists …

[HTML][HTML] deepTools2: a next generation web server for deep-sequencing data analysis

F Ramírez, DP Ryan, B Grüning, V Bhardwaj… - Nucleic acids …, 2016 - ncbi.nlm.nih.gov
We present an update to our Galaxy-based web server for processing and visualizing
deeply sequenced data. Its core tool set, deepTools, allows users to perform complete …

Nextflow enables reproducible computational workflows

P Di Tommaso, M Chatzou, EW Floden, PP Barja… - Nature …, 2017 - nature.com
The increasing complexity of readouts for omics analyses goes hand-in-hand with concerns
about the reproducibility of experiments that analyze'big data'1, 2, 3. When analyzing very …

The nf-core framework for community-curated bioinformatics pipelines

PA Ewels, A Peltzer, S Fillinger, H Patel… - Nature …, 2020 - nature.com
To the Editor—The standardization, portability and reproducibility of analysis pipelines are
key issues within the bioinformatics community. Most bioinformatics pipelines are designed …

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

E Afgan, D Baker, M Van den Beek… - Nucleic acids …, 2016 - academic.oup.com
High-throughput data production technologies, particularly 'next-generation'DNA
sequencing, have ushered in widespread and disruptive changes to biomedical research …

deepTools: a flexible platform for exploring deep-sequencing data

F Ramírez, F Dündar, S Diehl, BA Grüning… - Nucleic acids …, 2014 - academic.oup.com
We present a Galaxy based web server for processing and visualizing deeply sequenced
data. The web server's core functionality consists of a suite of newly developed tools, called …

CNVkit: genome-wide copy number detection and visualization from targeted DNA sequencing

E Talevich, AH Shain, T Botton… - PLoS computational …, 2016 - journals.plos.org
Germline copy number variants (CNVs) and somatic copy number alterations (SCNAs) are
of significant importance in syndromic conditions and cancer. Massively parallel sequencing …

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

V Jalili, E Afgan, Q Gu, D Clements… - Nucleic acids …, 2020 - academic.oup.com
Abstract Galaxy (https://galaxyproject. org) is a web-based computational workbench used
by tens of thousands of scientists across the world to analyze large biomedical datasets …