Protein–DNA/RNA interactions: an overview of investigation methods in the-omics era

F Cozzolino, I Iacobucci, V Monaco… - Journal of Proteome …, 2021 - ACS Publications
The fields of application of functional proteomics are not limited to the study of protein–
protein interactions; they also extend to those involving protein complexes that bind DNA or …

The multiples fates of the flavivirus RNA genome during pathogenesis

C Mazeaud, W Freppel, L Chatel-Chaix - Frontiers in genetics, 2018 - frontiersin.org
The Flavivirus genus comprises many viruses (including dengue, Zika, West Nile and yellow
fever viruses) which constitute important public health concerns worldwide. For several of …

Identification of HNRNPK as regulator of hepatitis C virus particle production

M Poenisch, P Metz, H Blankenburg, A Ruggieri… - PLoS …, 2015 - journals.plos.org
Hepatitis C virus (HCV) is a major cause of chronic liver disease affecting around 130 million
people worldwide. While great progress has been made to define the principle steps of the …

A short chemically modified dsRNA-binding PNA (dbPNA) inhibits influenza viral replication by targeting viral RNA panhandle structure

J Kesy, KM Patil, SR Kumar, Z Shu, HY Yong… - Bioconjugate …, 2019 - ACS Publications
RNAs play critical roles in diverse catalytic and regulatory biological processes and are
emerging as important disease biomarkers and therapeutic targets. Thus, develo** …

[HTML][HTML] RNA binding proteins as pioneer determinants of infection: protective, proviral, or both?

S Lisy, K Rothamel, M Ascano - Viruses, 2021 - mdpi.com
As the first intracellular host factors that directly interact with the genomes of RNA viruses,
RNA binding proteins (RBPs) have a profound impact on the outcome of an infection …

The impact of mass spectrometry–based proteomics on fundamental discoveries in virology

TM Greco, BA Diner, IM Cristea - Annual review of virology, 2014 - annualreviews.org
In recent years, mass spectrometry has emerged as a core component of fundamental
discoveries in virology. As a consequence of their coevolution, viruses and host cells have …

A host YB-1 ribonucleoprotein complex is hijacked by hepatitis C virus for the control of NS3-dependent particle production

L Chatel-Chaix, MA Germain, A Motorina… - Journal of …, 2013 - journals.asm.org
Hepatitis C virus (HCV) orchestrates the different stages of its life cycle in time and space
through the sequential participation of HCV proteins and cellular machineries; hence, these …

[HTML][HTML] Proteomics tracing the footsteps of infectious disease

TM Greco, IM Cristea - Molecular & Cellular Proteomics, 2017 - Elsevier
Every year, a major cause of human disease and death worldwide is infection with the
various pathogens—viruses, bacteria, fungi, and protozoa—that are intrinsic to our …

Internal disequilibria and phenotypic diversification during replication of hepatitis C virus in a noncoevolving cellular environment

E Moreno, I Gallego, J Gregori, A Lucía-Sanz… - Journal of …, 2017 - journals.asm.org
Viral quasispecies evolution upon long-term virus replication in a noncoevolving cellular
environment raises relevant general issues, such as the attainment of population …

Entangled in a membranous web: ER and lipid droplet reorganization during hepatitis C virus infection

NL Meyers, KA Fontaine, GR Kumar, M Ott - Current opinion in cell biology, 2016 - Elsevier
Hepatitis C virus (HCV) is a major cause of liver disease worldwide. To establish and
maintain chronic infection, HCV extensively rearranges cellular organelles to generate …